Variant report

Variant	rs73115191
Chromosome Location	chr4:31053826-31053827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:31051792..31054790-chr4:31417702..31420496,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10939327	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11736953	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12506199	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12641003	0.87[ASN][1000 genomes]
rs12645319	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1499471	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2036244	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs36069924	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4348052	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56854499	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60167602	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66472059	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66982156	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs67114056	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67840794	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6837499	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6852560	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72619201	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73113493	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73113497	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73115169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73115201	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73117110	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9684179	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31050200-31057600	Weak transcription	Aorta	Aorta
2	chr4:31052400-31054000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:31052400-31054600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:31052800-31054000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:31052800-31054000	Enhancers	HUVEC	blood vessel
6	chr4:31052800-31054200	Enhancers	Fetal Heart	heart
7	chr4:31053600-31054000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:31053600-31054000	Enhancers	Colon Smooth Muscle	Colon
9	chr4:31053600-31054200	Enhancers	Fetal Lung	lung
10	chr4:31053600-31055000	Enhancers	Brain Angular Gyrus	brain
11	chr4:31053800-31054200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:31053800-31055000	Enhancers	Brain Substantia Nigra	brain

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