Variant report

Variant	rs36102524
Chromosome Location	chr20:24371365-24371366
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11697434	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11698416	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11698961	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11700348	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34236012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34578937	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs36008078	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6076225	0.81[ASN][1000 genomes]
rs6083509	0.81[ASN][1000 genomes]
rs74173638	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs74173639	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs74173644	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24366800-24371600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr20:24367400-24371600	Enhancers	Fetal Thymus	thymus
3	chr20:24368400-24371600	Enhancers	Thymus	Thymus
4	chr20:24368800-24371600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr20:24369000-24371400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr20:24369000-24371600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr20:24369200-24371600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr20:24369400-24372200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr20:24369600-24371600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr20:24369800-24371400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr20:24369800-24371400	Flanking Active TSS	Dnd41	blood
12	chr20:24369800-24371600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr20:24370400-24371600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr20:24370400-24372800	Enhancers	Primary T cells from cord blood	blood
15	chr20:24370600-24371600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr20:24370600-24376200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:24370600-24387400	Weak transcription	Right Atrium	heart
18	chr20:24370800-24371400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr20:24371000-24371400	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links