Variant report

Variant	rs36138717
Chromosome Location	chr1:76297918-76297919
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10041033	0.83[ASN][1000 genomes]
rs10042504	0.86[ASN][1000 genomes]
rs10055539	0.86[ASN][1000 genomes]
rs10059354	0.81[ASN][1000 genomes]
rs10061339	0.88[ASN][1000 genomes]
rs10071725	0.82[ASN][1000 genomes]
rs10076490	0.86[ASN][1000 genomes]
rs10079493	0.83[ASN][1000 genomes]
rs1016621	0.81[ASN][1000 genomes]
rs10214007	0.85[ASN][1000 genomes]
rs1039797	0.83[ASN][1000 genomes]
rs10471362	0.85[ASN][1000 genomes]
rs10940334	0.81[ASN][1000 genomes]
rs10940335	0.83[ASN][1000 genomes]
rs10940336	0.83[ASN][1000 genomes]
rs11948302	0.83[ASN][1000 genomes]
rs11948752	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11959569	0.83[ASN][1000 genomes]
rs12651909	0.85[ASN][1000 genomes]
rs13155292	0.83[ASN][1000 genomes]
rs13157992	0.97[ASN][1000 genomes]
rs13159506	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13173678	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13180767	0.81[ASN][1000 genomes]
rs13180852	0.89[ASN][1000 genomes]
rs13184498	0.81[ASN][1000 genomes]
rs13185587	0.85[ASN][1000 genomes]
rs13357429	0.88[ASN][1000 genomes]
rs1606226	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16879094	0.92[ASN][1000 genomes]
rs1811742	0.89[ASN][1000 genomes]
rs1812994	0.85[ASN][1000 genomes]
rs1833900	0.83[ASN][1000 genomes]
rs1849200	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962832	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1995795	0.83[ASN][1000 genomes]
rs2036901	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2036902	0.87[ASN][1000 genomes]
rs2089605	0.88[ASN][1000 genomes]
rs2137132	0.83[ASN][1000 genomes]
rs2137134	0.83[ASN][1000 genomes]
rs2271236	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2353436	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2668024	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28445612	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28500170	0.95[ASN][1000 genomes]
rs28528780	0.92[ASN][1000 genomes]
rs28661824	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28676351	0.92[ASN][1000 genomes]
rs2883164	0.89[ASN][1000 genomes]
rs303219	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs303231	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs303235	0.85[ASN][1000 genomes]
rs303237	0.85[ASN][1000 genomes]
rs34044048	0.90[ASN][1000 genomes]
rs34044167	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34741488	0.85[ASN][1000 genomes]
rs34749302	0.83[ASN][1000 genomes]
rs34774804	0.82[ASN][1000 genomes]
rs34945845	0.84[ASN][1000 genomes]
rs34950042	0.83[ASN][1000 genomes]
rs3849669	0.83[ASN][1000 genomes]
rs3849670	0.85[ASN][1000 genomes]
rs3860732	0.85[ASN][1000 genomes]
rs3950451	0.83[ASN][1000 genomes]
rs4029989	0.88[ASN][1000 genomes]
rs4030569	0.85[ASN][1000 genomes]
rs4030570	0.85[ASN][1000 genomes]
rs4030571	0.85[ASN][1000 genomes]
rs4030572	0.86[ASN][1000 genomes]
rs4030573	0.84[ASN][1000 genomes]
rs4031137	0.83[ASN][1000 genomes]
rs4082836	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4145844	0.85[ASN][1000 genomes]
rs4277861	0.81[ASN][1000 genomes]
rs4398636	0.86[ASN][1000 genomes]
rs4495185	0.88[ASN][1000 genomes]
rs4549528	0.85[ASN][1000 genomes]
rs4563580	0.87[ASN][1000 genomes]
rs4571473	0.85[ASN][1000 genomes]
rs4637546	0.81[ASN][1000 genomes]
rs57137858	0.85[ASN][1000 genomes]
rs57583601	0.98[ASN][1000 genomes]
rs58756661	0.92[ASN][1000 genomes]
rs59254474	0.92[ASN][1000 genomes]
rs62365887	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62365896	0.89[ASN][1000 genomes]
rs62365901	0.97[ASN][1000 genomes]
rs62365902	0.93[ASN][1000 genomes]
rs62386175	0.80[ASN][1000 genomes]
rs6450056	0.80[ASN][1000 genomes]
rs6450063	0.85[ASN][1000 genomes]
rs6450098	0.88[ASN][1000 genomes]
rs6450099	0.86[ASN][1000 genomes]
rs6450107	0.90[ASN][1000 genomes]
rs6450139	0.89[ASN][1000 genomes]
rs6450164	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6869871	0.88[ASN][1000 genomes]
rs6874829	0.83[ASN][1000 genomes]
rs7446360	0.88[ASN][1000 genomes]
rs7706105	0.83[ASN][1000 genomes]
rs7712749	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7712849	0.88[ASN][1000 genomes]
rs7717982	0.85[ASN][1000 genomes]
rs7721808	0.85[ASN][1000 genomes]
rs7732000	0.82[ASN][1000 genomes]
rs9292005	0.90[ASN][1000 genomes]
rs9716734	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014072	chr1:76200531-76460726	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv535005	chr1:76200531-76460726	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1795237	chr1:76268573-76383565	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv1800125	chr1:76269439-76379497	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1799260	chr1:76269439-76383297	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv1847721	chr1:76269439-76383565	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1466	chr1:76280957-76299478	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs36138717	PARP8	Cis_1M	lymphoblastoid	RTeQTL
rs36138717	LOC647121	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76295800-76307800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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