The 2.0 version of rSNPBase

Variant report

Variant rs6450107
Chromosome Location chr5:49725903-49725904
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:49703200-49727000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr5:49718400-49727400 Weak transcription HUES48 Cell Line embryonic stem cell
3 chr5:49719200-49726800 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr5:49720400-49736400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
5 chr5:49720400-49736400 Weak transcription Spleen Spleen
6 chr5:49720600-49726000 Weak transcription NHEK skin
7 chr5:49720600-49726400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr5:49720600-49726800 Weak transcription HSMMtube muscle
9 chr5:49723600-49735200 Enhancers Primary T killer naive cells fromperipheralblood blood
10 chr5:49723800-49727400 Enhancers Primary T helper 17 cells PMA-I stimulated --
11 chr5:49724000-49726200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr5:49724000-49726200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
13 chr5:49724000-49726200 Weak transcription HMEC breast
14 chr5:49724000-49733400 Enhancers Primary T helper naive cells from peripheral blood blood
15 chr5:49724200-49726000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
16 chr5:49724200-49726000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr5:49724200-49727400 Enhancers Primary B cells from peripheral blood blood
18 chr5:49724200-49727400 Enhancers Primary T cells fromperipheralblood blood
19 chr5:49724200-49731000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr5:49724200-49735800 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr5:49724400-49726000 Enhancers Monocytes-CD14+_RO01746 blood
22 chr5:49724400-49726200 Enhancers Primary T regulatory cells fromperipheralblood blood
23 chr5:49724400-49727800 Enhancers Primary monocytes fromperipheralblood blood
24 chr5:49724400-49730400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
25 chr5:49724600-49726000 Enhancers Primary Natural Killer cells fromperipheralblood blood
26 chr5:49724600-49727200 Enhancers Primary hematopoietic stem cells blood
27 chr5:49724600-49728000 Enhancers Primary B cells from cord blood blood
28 chr5:49724600-49729200 Enhancers Primary T helper cells fromperipheralblood blood
29 chr5:49724600-49730400 Enhancers Primary T helper naive cells fromperipheralblood blood
30 chr5:49724600-49732400 Enhancers Primary T cells from cord blood blood
31 chr5:49724800-49727400 Enhancers Primary T killer memory cells from peripheral blood blood
32 chr5:49724800-49732800 Enhancers Primary neutrophils fromperipheralblood blood
33 chr5:49725000-49729000 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
34 chr5:49725600-49726000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr5:49725600-49727200 Flanking Active TSS Dnd41 blood
36 chr5:49725600-49727200 Enhancers HSMM muscle
37 chr5:49725600-49727400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr5:49725800-49726000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
39 chr5:49725800-49726000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
40 chr5:49725800-49726000 Enhancers Small Intestine intestine
41 chr5:49725800-49726200 Weak transcription Fetal Thymus thymus
42 chr5:49725800-49726800 Enhancers Muscle Satellite Cultured Cells --
43 chr5:49725800-49727400 Enhancers Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015