Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72372812..72375508-chr14:72386588..72389272,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11621415	0.91[ASN][1000 genomes]
rs11623548	0.81[CHB][hapmap]
rs11623588	0.81[CHB][hapmap]
rs12433726	0.98[ASN][1000 genomes]
rs12590831	0.81[CHB][hapmap]
rs17093752	0.87[ASN][1000 genomes]
rs1860104	0.81[CHB][hapmap]
rs1978225	0.80[CHB][hapmap]
rs1978227	0.81[CHB][hapmap]
rs2010848	0.81[CHB][hapmap]
rs2190873	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2238284	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.82[TSI][hapmap];0.87[ASN][1000 genomes]
rs2283424	0.81[CHB][hapmap]
rs2283426	0.81[CHB][hapmap]
rs2332699	0.97[ASN][1000 genomes]
rs36332	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36340	0.90[ASN][1000 genomes]
rs36341	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36344	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36345	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36360	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs36361	0.89[ASN][1000 genomes]
rs36363	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899405	0.98[ASN][1000 genomes]
rs4902964	0.81[CHB][hapmap]
rs7152936	0.89[ASN][1000 genomes]
rs7152951	0.92[ASN][1000 genomes]
rs7155855	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs960431	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1345	chr14:72349589-72395819	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs36350	VSX2	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72386000-72390200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:72386200-72396800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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