Variant report

Variant	rs369103489
Chromosome Location	chr6:34664182-34664183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:104)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:104 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr6:34663022-34665275	IMR90	lung:	n/a	n/a
2	POLR2A	chr6:34663985-34665203	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr6:34664081-34665053	ECC-1	luminal epithelium:	n/a	n/a
4	CHD2	chr6:34664068-34664966	Hela-S3	cervix:	n/a	n/a
5	CREB1	chr6:34663844-34665332	HepG2	liver:	n/a	chr6:34664726-34664739
6	POLR2A	chr6:34664051-34664897	Hela-S3	cervix:	n/a	n/a
7	MAZ	chr6:34663842-34664997	GM12878	blood:	n/a	n/a
8	RCOR1	chr6:34664100-34666097	K562	blood:	n/a	n/a
9	POLR2A	chr6:34664121-34664548	GM12891	blood:	n/a	n/a
10	UBTF	chr6:34663919-34664526	K562	blood:	n/a	n/a
11	MTA3	chr6:34663047-34664418	GM12878	blood:	n/a	n/a
12	ELF1	chr6:34663848-34665068	GM12878	blood:	n/a	n/a
13	CREB1	chr6:34664102-34665381	HepG2	liver:	n/a	chr6:34664726-34664739
14	CEBPB	chr6:34664135-34664288	Hela-S3	cervix:	n/a	n/a
15	POLR2A	chr6:34664018-34665108	MCF-7	breast:	n/a	n/a
16	POLR2A	chr6:34663852-34665298	GM12892	blood:	n/a	n/a
17	MXI1	chr6:34664152-34664294	K562	blood:	n/a	n/a
18	MYC	chr6:34664134-34664384	K562	blood:	n/a	n/a
19	MAX	chr6:34664161-34665372	A549	lung:	n/a	n/a
20	ZNF263	chr6:34663074-34664453	HEK293-T-REx	kidney:	n/a	chr6:34663577-34663586
21	MXI1	chr6:34664108-34665181	Hela-S3	cervix:	n/a	n/a
22	TAF1	chr6:34663985-34664907	HepG2	liver:	n/a	n/a
23	POLR2A	chr6:34664075-34665197	GM18526	blood:	n/a	n/a
24	SMARCB1	chr6:34663833-34665020	Hela-S3	cervix:	n/a	n/a
25	SIN3A	chr6:34663786-34664505	H1-hESC	embryonic stem cell:	n/a	chr6:34664040-34664053
26	RCOR1	chr6:34663976-34664294	HepG2	liver:	n/a	n/a
27	MAX	chr6:34663930-34664346	Hela-S3	cervix:	n/a	n/a
28	MAX	chr6:34663952-34664479	ECC-1	luminal epithelium:	n/a	n/a
29	POLR2A	chr6:34664012-34666018	K562	blood:	n/a	n/a
30	POLR2A	chr6:34663927-34665096	MCF-7	breast:	n/a	n/a
31	STAT3	chr6:34664173-34664294	MCF10A-Er-Src	breast:	n/a	n/a
32	CHD1	chr6:34662884-34665377	IMR90	lung:	n/a	n/a
33	UBTF	chr6:34663083-34665151	K562	blood:	n/a	n/a
34	RAD21	chr6:34663977-34664487	IMR90	lung:	n/a	n/a
35	POLR2A	chr6:34664009-34665280	H1-hESC	embryonic stem cell:	n/a	n/a
36	MAX	chr6:34664163-34665181	GM12878	blood:	n/a	n/a
37	POLR2A	chr6:34664163-34664380	Gliobla	brain:	n/a	n/a
38	POLR2A	chr6:34664025-34665390	HepG2	liver:	n/a	n/a
39	NR2F2	chr6:34663078-34665516	K562	blood:	n/a	n/a
40	YY1	chr6:34663907-34665210	K562	blood:	n/a	chr6:34664807-34664816 chr6:34664181-34664195 chr6:34664808-34664819 chr6:34664190-34664204
41	YY1	chr6:34663957-34664540	GM12878	blood:	n/a	chr6:34664181-34664195 chr6:34664190-34664204
42	RCOR1	chr6:34662922-34665012	Hela-S3	cervix:	n/a	n/a
43	MAX	chr6:34664043-34665246	K562	blood:	n/a	n/a
44	POLR2A	chr6:34663998-34665098	GM12878	blood:	n/a	n/a
45	POLR2A	chr6:34664021-34665067	GM12878	blood:	n/a	n/a
46	POLR2A	chr6:34663999-34665448	Raji	blood:	n/a	n/a
47	TAF1	chr6:34664017-34665005	HepG2	liver:	n/a	n/a
48	HMGN3	chr6:34664072-34665118	K562	blood:	n/a	n/a
49	YY1	chr6:34663820-34665117	HepG2	liver:	n/a	chr6:34664807-34664816 chr6:34664181-34664195 chr6:34664808-34664819 chr6:34664190-34664204
50	MYC	chr6:34664080-34664492	MCF-7	breast:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:34663247..34666234-chr6:34723415..34727175,3	K562	blood:
2	chr6:34663461..34666396-chr6:34758437..34761219,3	K562	blood:
3	chr6:34663907..34669185-chr6:34723600..34728462,6	MCF-7	breast:
4	chr6:34660360..34662631-chr6:34662736..34665398,3	K562	blood:
5	chr6:34433144..34435297-chr6:34663197..34665594,2	MCF-7	breast:
6	chr6:34662895..34664989-chr6:34725317..34726977,2	MCF-7	breast:
7	chr6:34659775..34661894-chr6:34663558..34666240,3	K562	blood:
8	chr6:34653279..34655876-chr6:34663256..34664778,2	MCF-7	breast:
9	chr6:34663247..34666328-chr6:34722695..34726583,8	K562	blood:
10	chr6:34657528..34660560-chr6:34662754..34664755,3	MCF-7	breast:
11	chr6:34392408..34394621-chr6:34663502..34666102,2	K562	blood:
12	chr6:34649586..34652220-chr6:34663564..34665833,2	MCF-7	breast:
13	chr6:34584121..34585997-chr6:34662703..34665284,2	K562	blood:
14	chr6:34662945..34666396-chr6:34758284..34762755,7	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNRPC-2	chr6:34664094-34664499	ENSG00000272288.1

No data

Variant related genes	Relation type
ENSG00000272288	TF binding region
ENSG00000220643	Chromatin interaction
ENSG00000065060	Chromatin interaction
ENSG00000216636	Chromatin interaction
ENSG00000238484	Chromatin interaction
ENSG00000124562	Chromatin interaction
ENSG00000124614	Chromatin interaction
ENSG00000239059	Chromatin interaction
ENSG00000124507	Chromatin interaction
ENSG00000265123	Chromatin interaction
ENSG00000270800	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2758046	chr6:34382492-34714677	Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	esv2759418	chr6:34382492-34714677	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv830640	chr6:34542489-34714677	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
9	nsv885794	chr6:34561585-34673149	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
13	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	nsv5255	chr6:34658569-34703563	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
15	esv3341496	chr6:34663774-34665822	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34659800-34665600	Active TSS	GM12878-XiMat	blood
2	chr6:34662200-34665400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr6:34662600-34664200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:34662600-34665400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:34662800-34664200	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr6:34662800-34664200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr6:34662800-34664200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
8	chr6:34662800-34664200	Active TSS	Right Atrium	heart
9	chr6:34662800-34664200	Flanking Active TSS	Dnd41	blood
10	chr6:34662800-34664200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:34662800-34665200	Active TSS	Aorta	Aorta
12	chr6:34662800-34665200	Active TSS	Esophagus	oesophagus
13	chr6:34662800-34665200	Active TSS	Fetal Muscle Trunk	muscle
14	chr6:34662800-34665400	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:34662800-34665400	Active TSS	HSMMtube	muscle
16	chr6:34662800-34665600	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr6:34663000-34664200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
18	chr6:34663000-34664200	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr6:34663000-34664200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:34663000-34664200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:34663000-34664200	Flanking Active TSS	Fetal Brain Male	brain
22	chr6:34663000-34664400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:34663000-34665000	Active TSS	NHLF	lung
24	chr6:34663000-34665200	Active TSS	Lung	lung
25	chr6:34663000-34665200	Active TSS	Pancreas	Pancrea
26	chr6:34663000-34665200	Active TSS	Stomach Mucosa	stomach
27	chr6:34663000-34665400	Active TSS	H9 Cell Line	embryonic stem cell
28	chr6:34663200-34664200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr6:34663200-34664200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr6:34663200-34664200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr6:34663200-34665200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:34663200-34665200	Active TSS	Duodenum Smooth Muscle	Duodenum
33	chr6:34663200-34665200	Active TSS	Gastric	stomach
34	chr6:34663200-34665200	Active TSS	Left Ventricle	heart
35	chr6:34663200-34665400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:34663200-34665400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:34663200-34665400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:34663200-34665400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:34663200-34665400	Active TSS	Colon Smooth Muscle	Colon
40	chr6:34663200-34665400	Active TSS	Fetal Intestine Large	intestine
41	chr6:34663200-34665400	Active TSS	Ovary	ovary
42	chr6:34663200-34665600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:34663400-34664200	Flanking Active TSS	Placenta	Placenta
44	chr6:34663400-34665000	Active TSS	H1 Cell Line	embryonic stem cell
45	chr6:34663400-34665000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:34663400-34665000	Active TSS	Fetal Heart	heart
47	chr6:34663400-34665200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr6:34663400-34665200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:34663400-34665200	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr6:34663400-34665200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell

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