Variant report

Variant	rs369570
Chromosome Location	chr13:93881656-93881657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93865733..93868026-chr13:93879427..93882224,2	K562	blood:
2	chr13:93879341..93882111-chr13:94847801..94850206,2	MCF-7	breast:
3	chr13:93879737..93882556-chr13:93905136..93907942,2	K562	blood:
4	chr13:93880775..93882507-chr13:93894368..93896600,2	MCF-7	breast:
5	chr13:93851878..93853804-chr13:93880087..93882810,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1116259	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1116260	0.94[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11839667	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11840691	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11843447	0.94[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs1887707	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1887708	0.94[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1887709	0.94[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4773722	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55695812	0.89[EUR][1000 genomes]
rs7326297	0.94[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7334414	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7992869	0.94[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7994461	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7999192	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7999514	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7999706	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9516198	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs9516199	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs9523967	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9523968	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9523969	0.94[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9523970	0.84[CEU][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9523971	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9523972	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9523976	0.94[CEU][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9523978	0.94[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9523982	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs9556271	0.84[EUR][1000 genomes]
rs9556274	0.94[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9561280	0.84[EUR][1000 genomes]
rs9561283	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9561289	0.94[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9561293	0.81[EUR][1000 genomes]
rs9561294	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs9584093	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93878000-93882800	Active TSS	Aorta	Aorta
2	chr13:93878200-93882200	Active TSS	Fetal Brain Male	brain
3	chr13:93878200-93882800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr13:93878400-93882000	Active TSS	Ovary	ovary
5	chr13:93878400-93882400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:93878400-93882600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr13:93878600-93881800	Active TSS	NHDF-Ad	bronchial
8	chr13:93878600-93881800	Active TSS	Osteobl	bone
9	chr13:93878600-93882000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:93878600-93882000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:93878600-93882000	Active TSS	Fetal Intestine Large	intestine
12	chr13:93878600-93882200	Active TSS	Brain Germinal Matrix	brain
13	chr13:93878600-93882400	Active TSS	NHLF	lung
14	chr13:93878800-93881800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:93878800-93881800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:93878800-93881800	Active TSS	Fetal Lung	lung
17	chr13:93878800-93882200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:93878800-93882600	Active TSS	Fetal Kidney	kidney
19	chr13:93878800-93883200	Active TSS	Fetal Brain Female	brain
20	chr13:93879000-93881800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:93879000-93882000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr13:93879600-93881800	Active TSS	H1 Cell Line	embryonic stem cell
23	chr13:93881000-93881800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr13:93881000-93881800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr13:93881000-93881800	Active TSS	HepG2	liver
26	chr13:93881000-93882400	Active TSS	Fetal Stomach	stomach
27	chr13:93881000-93883000	Active TSS	A549	lung
28	chr13:93881000-93883200	Flanking Active TSS	Liver	Liver
29	chr13:93881000-93886000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:93881200-93881800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr13:93881200-93881800	Flanking Active TSS	HMEC	breast
32	chr13:93881200-93882200	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr13:93881200-93882600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr13:93881200-93883000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:93881200-93885800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr13:93881400-93881800	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr13:93881400-93882000	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr13:93881400-93882400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr13:93881400-93882400	Enhancers	Fetal Heart	heart
40	chr13:93881400-93882600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr13:93881400-93882600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr13:93881400-93882800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr13:93881400-93883200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr13:93881400-93883200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr13:93881600-93881800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr13:93881600-93881800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr13:93881600-93881800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr13:93881600-93881800	Flanking Active TSS	HSMM	muscle
49	chr13:93881600-93881800	Flanking Active TSS	NH-A	brain
50	chr13:93881600-93882000	Weak transcription	Adipose Nuclei	Adipose

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