Variant report

Variant	rs9556271
Chromosome Location	chr13:93875808-93875809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93875719..93877813-chr13:93914572..93917548,2	K562	blood:
2	chr13:93875350..93876987-chr9:134150434..134153126,2	K562	blood:
3	chr13:93874469..93877049-chr13:93887079..93889596,2	K562	blood:
4	chr13:93852509..93854417-chr13:93874503..93876110,2	K562	blood:

Variant related genes	Relation type
ENSG00000126882	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs369570	0.84[EUR][1000 genomes]
rs61628314	1.00[ASN][1000 genomes]
rs61964244	0.93[AMR][1000 genomes]
rs9561279	0.80[ASN][1000 genomes]
rs9561280	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561283	0.84[EUR][1000 genomes]
rs9584093	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93868800-93876800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:93869000-93878200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:93870000-93876600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:93870400-93876600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:93870600-93877000	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:93871200-93876800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:93871200-93876800	Weak transcription	HMEC	breast
8	chr13:93871200-93877800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:93871200-93878400	Weak transcription	Fetal Brain Female	brain
10	chr13:93871400-93876800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:93874200-93876600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:93874200-93876800	Weak transcription	Fetal Intestine Large	intestine
13	chr13:93874800-93876600	Weak transcription	Fetal Intestine Small	intestine
14	chr13:93874800-93878200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:93875000-93876000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr13:93875000-93876000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr13:93875000-93878200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr13:93875200-93876000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:93875200-93876600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr13:93875200-93876600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr13:93875400-93876000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:93875400-93876800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr13:93875400-93877000	Enhancers	HepG2	liver
24	chr13:93875400-93877400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr13:93875400-93878200	Weak transcription	Right Atrium	heart
26	chr13:93875600-93876600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr13:93875600-93876600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr13:93875600-93876800	Weak transcription	NH-A	brain
29	chr13:93875600-93878000	Weak transcription	Brain Germinal Matrix	brain
30	chr13:93875600-93878200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr13:93875800-93876600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr13:93875800-93876800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr13:93875800-93877000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr13:93875800-93878400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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