Variant report

Variant	rs9584093
Chromosome Location	chr13:93876784-93876785
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:92)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:92 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF3	chr13:93876672-93877198	A549	lung:	n/a	n/a
2	MBD4	chr13:93876705-93877278	HepG2	liver:	n/a	n/a
3	TEAD4	chr13:93876659-93877206	A549	lung:	n/a	chr13:93876920-93876929
4	TEAD4	chr13:93876578-93877341	HepG2	liver:	n/a	chr13:93876920-93876929
5	HDAC2	chr13:93876763-93877268	MCF-7	breast:	n/a	n/a
6	BHLHE40	chr13:93876578-93877079	K562	blood:	n/a	n/a
7	FOXA1	chr13:93876652-93877329	HepG2	liver:	n/a	n/a
8	NR2F2	chr13:93876738-93877336	MCF-7	breast:	n/a	n/a
9	MAX	chr13:93876743-93877080	HepG2	liver:	n/a	n/a
10	MBD4	chr13:93876658-93877265	HepG2	liver:	n/a	n/a
11	EP300	chr13:93876717-93877264	HepG2	liver:	n/a	n/a
12	ATF2	chr13:93876719-93877162	H1-hESC	embryonic stem cell:	n/a	n/a
13	RAD21	chr13:93876780-93877201	HepG2	liver:	n/a	n/a
14	MAX	chr13:93876695-93877292	HepG2	liver:	n/a	n/a
15	RCOR1	chr13:93876772-93877179	HepG2	liver:	n/a	n/a
16	ESR1	chr13:93876724-93877219	T-47D	breast:	n/a	n/a
17	MYBL2	chr13:93876649-93877343	HepG2	liver:	n/a	n/a
18	FOXA2	chr13:93876661-93877085	A549	lung:	n/a	n/a
19	HNF4G	chr13:93876714-93877195	HepG2	liver:	n/a	chr13:93876987-93877002
20	FOXA2	chr13:93876743-93877205	HepG2	liver:	n/a	n/a
21	TCF12	chr13:93876777-93877184	A549	lung:	n/a	n/a
22	FOSL2	chr13:93876726-93877233	HepG2	liver:	n/a	chr13:93877067-93877076
23	USF1	chr13:93876698-93877092	A549	lung:	n/a	n/a
24	FOSL2	chr13:93876748-93877130	HepG2	liver:	n/a	chr13:93877067-93877076
25	SP1	chr13:93876640-93877209	HepG2	liver:	n/a	n/a
26	EP300	chr13:93876642-93877294	HepG2	liver:	n/a	n/a
27	HDAC2	chr13:93876678-93877226	HepG2	liver:	n/a	n/a
28	RXRA	chr13:93876647-93877100	H1-hESC	embryonic stem cell:	n/a	chr13:93876876-93876890
29	EP300	chr13:93876657-93877366	MCF-7	breast:	n/a	n/a
30	JUND	chr13:93876776-93877455	HepG2	liver:	n/a	chr13:93877371-93877381 chr13:93877067-93877076
31	EP300	chr13:93876586-93877335	A549	lung:	n/a	n/a
32	USF1	chr13:93876782-93877050	A549	lung:	n/a	n/a
33	FOXA1	chr13:93876642-93877314	HepG2	liver:	n/a	n/a
34	CEBPB	chr13:93876779-93877167	HepG2	liver:	n/a	n/a
35	TEAD4	chr13:93876576-93877187	A549	lung:	n/a	chr13:93876920-93876929
36	MAX	chr13:93876654-93877248	A549	lung:	n/a	n/a
37	ZBTB33	chr13:93876779-93877104	A549	lung:	n/a	n/a
38	HDAC2	chr13:93876723-93877218	HepG2	liver:	n/a	n/a
39	TCF12	chr13:93876720-93877250	SK-N-SH	brain:	n/a	n/a
40	HNF4G	chr13:93876723-93877224	HepG2	liver:	n/a	chr13:93876987-93877002
41	NR3C1	chr13:93876744-93877128	A549	lung:	n/a	n/a
42	RXRA	chr13:93876635-93877323	HepG2	liver:	n/a	chr13:93876876-93876890
43	CEBPB	chr13:93876714-93877376	A549	lung:	n/a	n/a
44	MAX	chr13:93876708-93877167	MCF-7	breast:	n/a	n/a
45	SETDB1	chr13:93876741-93877324	U2OS	brain:	n/a	n/a
46	POLR2A	chr13:93876682-93877179	HepG2	liver:	n/a	n/a
47	SP1	chr13:93876717-93877155	H1-hESC	embryonic stem cell:	n/a	n/a
48	RXRA	chr13:93876769-93877109	H1-hESC	embryonic stem cell:	n/a	chr13:93876876-93876890
49	ELF1	chr13:93876777-93877098	HepG2	liver:	n/a	n/a
50	BCL3	chr13:93876713-93877277	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:93875719..93877813-chr13:93914572..93917548,2	K562	blood:
2	chr13:93876590..93877329-chr13:93885822..93886900,3	MCF-7	breast:
3	chr13:93875350..93876987-chr9:134150434..134153126,2	K562	blood:
4	chr13:93876570..93877337-chr13:93886214..93886903,5	MCF-7	breast:
5	chr13:93876646..93877175-chr13:93885988..93886813,2	MCF-7	breast:
6	chr13:93874469..93877049-chr13:93887079..93889596,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DCT-16	chr13:93876780-93879077	NONHSAT034710

No data

Variant related genes	Relation type
GPC6	TF binding region
ENSG00000126882	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1116260	0.81[TSI][hapmap]
rs1887708	0.83[TSI][hapmap]
rs369570	0.82[EUR][1000 genomes]
rs61628314	1.00[ASN][1000 genomes]
rs61964244	0.92[AMR][1000 genomes]
rs7326297	0.83[TSI][hapmap]
rs9556271	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9556274	0.85[TSI][hapmap]
rs9561279	0.80[ASN][1000 genomes]
rs9561280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9561283	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93868800-93876800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:93869000-93878200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:93870600-93877000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr13:93871200-93876800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:93871200-93876800	Weak transcription	HMEC	breast
6	chr13:93871200-93877800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:93871200-93878400	Weak transcription	Fetal Brain Female	brain
8	chr13:93871400-93876800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:93874200-93876800	Weak transcription	Fetal Intestine Large	intestine
10	chr13:93874800-93878200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:93875000-93878200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:93875400-93876800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr13:93875400-93877000	Enhancers	HepG2	liver
14	chr13:93875400-93877400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr13:93875400-93878200	Weak transcription	Right Atrium	heart
16	chr13:93875600-93876800	Weak transcription	NH-A	brain
17	chr13:93875600-93878000	Weak transcription	Brain Germinal Matrix	brain
18	chr13:93875600-93878200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:93875800-93876800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:93875800-93877000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr13:93875800-93878400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr13:93876000-93878000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr13:93876400-93876800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr13:93876400-93877000	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr13:93876600-93876800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr13:93876600-93876800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:93876600-93877200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:93876600-93877200	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr13:93876600-93877600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr13:93876600-93877600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:93876600-93877600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr13:93876600-93877600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
33	chr13:93876600-93878000	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr13:93876600-93878000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr13:93876600-93878200	Enhancers	H1 Cell Line	embryonic stem cell
36	chr13:93876600-93878400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr13:93876600-93878400	Enhancers	Fetal Intestine Small	intestine
38	chr13:93876600-93878600	Weak transcription	NHDF-Ad	bronchial
39	chr13:93876600-93878800	Flanking Active TSS	Liver	Liver

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