Variant report

Variant	rs9561283
Chromosome Location	chr13:93883485-93883486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:93882241..93884489-chr13:93897048..93899523,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1116259	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1116260	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11839667	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11840691	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11843447	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1887707	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1887708	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1887709	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs369570	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4773722	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55695812	0.89[EUR][1000 genomes]
rs7326297	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7334414	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7992869	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7994461	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7999192	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7999514	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7999706	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9516198	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9516199	0.81[EUR][1000 genomes]
rs9523967	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523968	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523969	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9523970	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9523971	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9523972	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523976	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523978	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9523982	0.81[EUR][1000 genomes]
rs9556271	0.84[EUR][1000 genomes]
rs9556274	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9561280	0.84[EUR][1000 genomes]
rs9561289	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9561293	0.81[EUR][1000 genomes]
rs9561294	0.81[EUR][1000 genomes]
rs9584093	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2558321	chr13:93882890-93884360	Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3365838	chr13:93883460-93883795	Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93881000-93886000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr13:93881200-93885800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:93881800-93883600	Enhancers	HMEC	breast
4	chr13:93881800-93884400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr13:93881800-93887400	Weak transcription	NHDF-Ad	bronchial
6	chr13:93882000-93884000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:93882000-93885800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr13:93882000-93886400	Weak transcription	Ovary	ovary
9	chr13:93882200-93884800	Enhancers	Fetal Intestine Small	intestine
10	chr13:93882200-93885800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:93882400-93884600	Enhancers	Fetal Intestine Large	intestine
12	chr13:93882600-93884400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr13:93882800-93884000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr13:93882800-93884200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:93882800-93884800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr13:93883000-93883600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr13:93883000-93884400	Weak transcription	Fetal Kidney	kidney
18	chr13:93883000-93884400	Weak transcription	A549	lung
19	chr13:93883200-93883600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:93883200-93883600	Enhancers	Osteobl	bone
21	chr13:93883200-93883800	Enhancers	Liver	Liver
22	chr13:93883200-93883800	Enhancers	HepG2	liver
23	chr13:93883200-93884000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr13:93883200-93884200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr13:93883200-93884200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:93883200-93884400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:93883200-93884400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr13:93883200-93885000	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr13:93883200-93885800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr13:93883200-93885800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr13:93883200-93885800	Weak transcription	Adipose Nuclei	Adipose
32	chr13:93883200-93886000	Weak transcription	Fetal Stomach	stomach
33	chr13:93883200-93886200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr13:93883200-93886400	Weak transcription	Aorta	Aorta
35	chr13:93883200-93887600	Weak transcription	Fetal Lung	lung
36	chr13:93883200-93888000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:93883200-93888400	Weak transcription	NH-A	brain
38	chr13:93883200-93890000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr13:93883200-93896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:93883200-93896000	Weak transcription	HSMM	muscle
41	chr13:93883400-93883800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr13:93883400-93884800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr13:93883400-93887400	Weak transcription	Colon Smooth Muscle	Colon
44	chr13:93883400-93887800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr13:93883400-93888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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