Variant report

Variant	rs3735631
Chromosome Location	chr7:103349295-103349296
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103348920..103351785-chr7:103353040..103357601,4	K562	blood:
2	chr7:103346006..103347594-chr7:103348639..103351482,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10237247	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10240733	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10240865	1.00[CEU][hapmap];0.89[CHB][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10250273	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10279900	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10281066	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154372	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154406	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154435	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17154438	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.88[MEX][hapmap];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17154462	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17154464	0.87[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17154820	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17154829	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1858782	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.94[MEX][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2106172	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2106173	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2157748	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2237632	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2283023	0.87[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.88[MEX][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2299363	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299364	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299365	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299367	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299368	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2299369	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299371	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2299373	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3213611	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3213612	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3753113	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3819455	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56364137	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs580884	0.85[JPT][hapmap]
rs59196529	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61283906	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs645260	0.81[CHB][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs729744	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73410860	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7794541	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7799028	0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs7803243	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103344000-103350600	Weak transcription	Hela-S3	cervix
3	chr7:103348000-103353800	Weak transcription	HepG2	liver

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