Variant report

Variant	rs7799028
Chromosome Location	chr7:103346226-103346227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103270998..103273560-chr7:103345066..103347137,2	K562	blood:
2	chr7:103346006..103347594-chr7:103348639..103351482,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10237247	0.81[ASN][1000 genomes]
rs10240733	0.82[ASN][1000 genomes]
rs10240865	0.82[ASN][1000 genomes]
rs10247465	0.90[LWK][hapmap];0.86[MKK][hapmap]
rs10250273	0.82[ASN][1000 genomes]
rs10265101	0.90[LWK][hapmap];0.86[MKK][hapmap]
rs10279900	0.82[ASN][1000 genomes]
rs10281066	0.82[ASN][1000 genomes]
rs17154372	0.82[ASN][1000 genomes]
rs17154406	0.82[ASN][1000 genomes]
rs17154435	0.81[ASN][1000 genomes]
rs17154438	0.82[ASN][1000 genomes]
rs17154462	0.81[ASN][1000 genomes]
rs17154464	0.81[ASN][1000 genomes]
rs17154820	0.81[ASN][1000 genomes]
rs17154829	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1858782	0.81[ASN][1000 genomes]
rs2106172	0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[ASN][1000 genomes]
rs2106173	0.82[ASN][1000 genomes]
rs2157748	0.81[CHD][hapmap];0.82[ASN][1000 genomes]
rs2237632	0.81[ASN][1000 genomes]
rs2283023	0.81[ASN][1000 genomes]
rs2299363	0.82[ASN][1000 genomes]
rs2299364	0.82[ASN][1000 genomes]
rs2299365	0.82[ASN][1000 genomes]
rs2299367	0.82[ASN][1000 genomes]
rs2299368	0.82[ASN][1000 genomes]
rs2299369	0.83[ASN][1000 genomes]
rs2299371	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2299373	0.81[ASN][1000 genomes]
rs3213612	0.86[JPT][hapmap]
rs3735631	0.85[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs3753113	0.82[ASN][1000 genomes]
rs3819455	0.83[ASN][1000 genomes]
rs56364137	0.82[ASN][1000 genomes]
rs580884	0.85[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs581081	0.84[ASN][1000 genomes]
rs59196529	0.81[ASN][1000 genomes]
rs645260	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs729744	0.81[ASN][1000 genomes]
rs73410860	0.84[ASN][1000 genomes]
rs7794541	0.83[ASN][1000 genomes]
rs7803243	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103344000-103350600	Weak transcription	Hela-S3	cervix
3	chr7:103346000-103348000	Enhancers	HepG2	liver

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