Variant report

Variant	rs56364137
Chromosome Location	chr7:103358313-103358314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103357438..103359358-chr7:103364069..103366186,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10237247	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10240733	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10240865	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10250273	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10279900	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10281066	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154372	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154406	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154435	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17154438	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17154462	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17154464	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17154820	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17154829	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1858782	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2106172	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2106173	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2157748	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237632	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2283023	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2299363	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299364	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299365	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2299367	0.94[ASN][1000 genomes]
rs2299368	0.94[ASN][1000 genomes]
rs2299369	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2299371	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2299373	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3213611	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3213612	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3735631	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3753113	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3819455	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs580884	0.85[ASN][1000 genomes]
rs581081	0.85[ASN][1000 genomes]
rs59196529	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61283906	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs645260	0.91[ASN][1000 genomes]
rs729744	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73410860	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7794541	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7799028	0.82[ASN][1000 genomes]
rs7803243	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103350800-103358600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:103351200-103359000	Weak transcription	NHDF-Ad	bronchial
4	chr7:103351400-103359600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:103354600-103358600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:103354600-103358800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:103355400-103374800	Weak transcription	HepG2	liver
8	chr7:103357200-103359000	Weak transcription	Brain Germinal Matrix	brain
9	chr7:103358000-103360400	Enhancers	HUVEC	blood vessel
10	chr7:103358200-103359600	Enhancers	Hela-S3	cervix
11	chr7:103358200-103360400	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links