Variant report

Variant	rs3819455
Chromosome Location	chr7:103352853-103352854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10237247	0.96[ASN][1000 genomes]
rs10240733	0.95[ASN][1000 genomes]
rs10240865	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10250273	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10279900	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10281066	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154372	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154406	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17154435	0.96[ASN][1000 genomes]
rs17154438	0.95[ASN][1000 genomes]
rs17154462	0.96[ASN][1000 genomes]
rs17154464	0.96[ASN][1000 genomes]
rs17154820	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17154829	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1858782	0.97[ASN][1000 genomes]
rs2106172	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2106173	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2157748	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2237632	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2283023	0.94[ASN][1000 genomes]
rs2299363	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299364	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299365	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299367	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299368	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2299369	1.00[ASN][1000 genomes]
rs2299371	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2299373	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3213611	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3213612	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3735631	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3753113	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56364137	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs580884	0.83[ASN][1000 genomes]
rs581081	0.83[ASN][1000 genomes]
rs59196529	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61283906	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs645260	0.89[ASN][1000 genomes]
rs729744	0.97[ASN][1000 genomes]
rs73410860	0.88[ASN][1000 genomes]
rs7794541	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799028	0.83[ASN][1000 genomes]
rs7803243	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv427799	chr7:103250733-103454202	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1835816	chr7:103255144-103354223	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103339000-103359600	Weak transcription	K562	blood
2	chr7:103348000-103353800	Weak transcription	HepG2	liver
3	chr7:103350800-103358200	Weak transcription	Hela-S3	cervix
4	chr7:103350800-103358600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:103351200-103359000	Weak transcription	NHDF-Ad	bronchial
6	chr7:103351400-103353400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:103351400-103359600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:103351800-103353400	Weak transcription	Osteobl	bone
9	chr7:103351800-103353600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:103352600-103353400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:103352600-103358000	Weak transcription	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links