Variant report
| Variant | rs581081 |
|---|---|
| Chromosome Location | chr7:103371384-103371385 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:103354410..103357861-chr7:103367523..103371715,4 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10237247 | 0.80[ASN][1000 genomes] |
| rs10240733 | 0.81[ASN][1000 genomes] |
| rs10240865 | 0.81[ASN][1000 genomes] |
| rs10250273 | 0.81[ASN][1000 genomes] |
| rs10279900 | 0.81[ASN][1000 genomes] |
| rs10281066 | 0.81[ASN][1000 genomes] |
| rs17154372 | 0.81[ASN][1000 genomes] |
| rs17154406 | 0.81[ASN][1000 genomes] |
| rs17154435 | 0.80[ASN][1000 genomes] |
| rs17154438 | 0.81[ASN][1000 genomes] |
| rs17154462 | 0.80[ASN][1000 genomes] |
| rs17154464 | 0.80[ASN][1000 genomes] |
| rs17154820 | 0.85[ASN][1000 genomes] |
| rs17154829 | 0.85[ASN][1000 genomes] |
| rs1858782 | 0.80[ASN][1000 genomes] |
| rs2106173 | 0.81[ASN][1000 genomes] |
| rs2157748 | 0.81[ASN][1000 genomes] |
| rs2237632 | 0.80[ASN][1000 genomes] |
| rs2283023 | 0.80[ASN][1000 genomes] |
| rs2299363 | 0.81[ASN][1000 genomes] |
| rs2299364 | 0.81[ASN][1000 genomes] |
| rs2299365 | 0.81[ASN][1000 genomes] |
| rs2299367 | 0.81[ASN][1000 genomes] |
| rs2299368 | 0.81[ASN][1000 genomes] |
| rs2299369 | 0.83[ASN][1000 genomes] |
| rs2299371 | 0.84[ASN][1000 genomes] |
| rs2299373 | 0.84[ASN][1000 genomes] |
| rs3213611 | 0.88[ASN][1000 genomes] |
| rs3213612 | 0.88[ASN][1000 genomes] |
| rs3753113 | 0.81[ASN][1000 genomes] |
| rs3819455 | 0.83[ASN][1000 genomes] |
| rs56364137 | 0.85[ASN][1000 genomes] |
| rs580884 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59196529 | 0.84[ASN][1000 genomes] |
| rs61283906 | 0.89[ASN][1000 genomes] |
| rs645260 | 0.93[ASN][1000 genomes] |
| rs729744 | 0.80[ASN][1000 genomes] |
| rs7794541 | 0.83[ASN][1000 genomes] |
| rs7799028 | 0.84[ASN][1000 genomes] |
| rs7803243 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491911 | chr7:102967150-103403622 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv427799 | chr7:103250733-103454202 | Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:103355400-103374800 | Weak transcription | HepG2 | liver |
| 2 | chr7:103370400-103371400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
