Variant report

Variant	rs3738587
Chromosome Location	chr1:155852008-155852009
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:155851366..155853563-chr1:155880365..155882780,2	K562	blood:
2	chr1:155851366..155854227-chr1:155880477..155882780,2	K562	blood:

Variant related genes	Relation type
ENSG00000143622	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1010033	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1018730	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1055184	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1094558	0.95[ASN][1000 genomes]
rs12039053	0.81[ASN][1000 genomes]
rs12138833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1544119	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs1749409	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2275071	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2275079	1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2275081	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2364402	0.85[ASN][1000 genomes]
rs2364404	0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs28379575	0.81[ASN][1000 genomes]
rs2886069	0.81[ASN][1000 genomes]
rs3768280	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4412586	0.83[ASN][1000 genomes]
rs4661160	0.81[ASN][1000 genomes]
rs4661162	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4661172	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs493446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs506688	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs527113	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs536870	0.90[ASN][1000 genomes]
rs572609	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6660802	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6667096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs708614	0.90[ASN][1000 genomes]
rs822502	0.81[ASN][1000 genomes]
rs822503	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs822653	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
2	esv3423892	chr1:155664084-155901487	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv916198	chr1:155804210-156403997	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	428 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155830000-155869000	Weak transcription	Gastric	stomach
2	chr1:155830400-155865800	Weak transcription	Esophagus	oesophagus
3	chr1:155830600-155866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:155831000-155862600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr1:155831000-155862800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:155831000-155863000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:155831200-155862800	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:155831400-155859000	Weak transcription	HUVEC	blood vessel
9	chr1:155836400-155866400	Weak transcription	Primary B cells from cord blood	blood
10	chr1:155837600-155863000	Weak transcription	Colonic Mucosa	Colon
11	chr1:155841400-155863000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr1:155841800-155869200	Weak transcription	Right Ventricle	heart
13	chr1:155842600-155863400	Weak transcription	Right Atrium	heart
14	chr1:155842800-155852600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:155842800-155853400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr1:155844000-155853600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:155844000-155862200	Weak transcription	Lung	lung
18	chr1:155844200-155853600	Weak transcription	NH-A	brain
19	chr1:155844200-155854200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:155844200-155855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:155844400-155874000	Weak transcription	Fetal Brain Male	brain
22	chr1:155845200-155853400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:155846800-155852200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr1:155846800-155854000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr1:155847000-155860200	Strong transcription	Fetal Brain Female	brain
26	chr1:155847200-155860200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr1:155847400-155860400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr1:155847600-155857000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:155847600-155866400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:155847800-155853400	Strong transcription	Brain Anterior Caudate	brain
31	chr1:155847800-155853400	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr1:155848200-155852400	Strong transcription	Brain Substantia Nigra	brain
33	chr1:155849000-155858000	Strong transcription	Brain Germinal Matrix	brain
34	chr1:155849400-155853200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr1:155849400-155863000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr1:155849600-155852600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:155849600-155853000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:155849600-155853400	Strong transcription	Brain Hippocampus Middle	brain
39	chr1:155849600-155854400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:155849600-155862800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:155849800-155853200	Strong transcription	Left Ventricle	heart
42	chr1:155850000-155852600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:155850000-155852600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr1:155850000-155853000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr1:155850000-155853200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr1:155850000-155862800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr1:155850200-155853400	Strong transcription	HSMM	muscle
48	chr1:155850200-155853600	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr1:155850400-155852600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:155850400-155853400	Strong transcription	Brain Angular Gyrus	brain

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