Variant report

Variant	rs374954990
Chromosome Location	chr16:35229160-35229161
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056617	chr16:34543711-35283214	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv572385	chr16:34583626-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
3	nsv1059363	chr16:34935402-35283214	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv482777	chr16:35124884-35279329	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv984237	chr16:35148868-35285801	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv572396	chr16:35162035-35232318	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
7	nsv572401	chr16:35168832-35244412	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
8	nsv527568	chr16:35168832-35249350	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
9	nsv572418	chr16:35184306-35232318	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	nsv572419	chr16:35184306-35244412	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
11	nsv572435	chr16:35185903-35257891	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
12	esv2830263	chr16:35185903-35269324	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
13	nsv572436	chr16:35186468-35285582	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a
14	esv3331504	chr16:35198151-35262849	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
15	esv3383559	chr16:35198151-35263549	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
16	esv3393483	chr16:35203351-35262849	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
17	nsv572437	chr16:35204644-35255677	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
18	nsv433446	chr16:35204644-35284399	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
19	nsv572438	chr16:35204644-35285582	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
20	esv3425463	chr16:35207151-35263149	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
21	nsv517097	chr16:35213863-35249350	Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
22	nsv572439	chr16:35228412-35264623	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
23	esv3347481	chr16:35229151-35234167	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:35224400-35237800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:35224600-35243000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr16:35226600-35229600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr16:35227400-35242800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr16:35228600-35229600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr16:35228600-35229600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
7	chr16:35228800-35229200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr16:35228800-35229400	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr16:35228800-35229400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
10	chr16:35228800-35229600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:35229000-35229200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr16:35229000-35229200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr16:35229000-35229200	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
14	chr16:35229000-35229200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
15	chr16:35229000-35229200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr16:35229000-35229200	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
17	chr16:35229000-35229200	ZNF genes & repeats	Fetal Kidney	kidney
18	chr16:35229000-35229200	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
19	chr16:35229000-35229200	ZNF genes & repeats	HSMMtube	muscle
20	chr16:35229000-35229400	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
21	chr16:35229000-35229400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
22	chr16:35229000-35229400	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr16:35229000-35229400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:35229000-35229400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:35229000-35229400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
26	chr16:35229000-35229400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr16:35229000-35229400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr16:35229000-35229400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
29	chr16:35229000-35229400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr16:35229000-35229400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr16:35229000-35229400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
32	chr16:35229000-35229400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
33	chr16:35229000-35229400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
34	chr16:35229000-35229400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
35	chr16:35229000-35229400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr16:35229000-35229400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
37	chr16:35229000-35229400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
38	chr16:35229000-35229400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
39	chr16:35229000-35229400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:35229000-35229400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
41	chr16:35229000-35229400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:35229000-35229400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr16:35229000-35229400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
44	chr16:35229000-35229400	ZNF genes & repeats	Adipose Nuclei	Adipose
45	chr16:35229000-35229400	ZNF genes & repeats	Aorta	Aorta
46	chr16:35229000-35229400	ZNF genes & repeats	Liver	Liver
47	chr16:35229000-35229400	ZNF genes & repeats	Brain Angular Gyrus	brain
48	chr16:35229000-35229400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
49	chr16:35229000-35229400	ZNF genes & repeats	Brain Hippocampus Middle	brain
50	chr16:35229000-35229400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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