Variant report

Variant	rs3756906
Chromosome Location	chr6:36563812-36563813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:32)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36507762..36509333-chr6:36562439..36564848,2	K562	blood:
2	chr6:36561839..36564756-chr6:36723772..36727529,4	MCF-7	breast:
3	chr6:36475084..36480133-chr6:36561035..36564418,5	MCF-7	breast:
4	chr6:36408693..36414213-chr6:36560362..36565197,15	MCF-7	breast:
5	chr6:36562557..36565797-chr6:36602689..36605789,3	K562	blood:
6	chr6:36560169..36564521-chr6:36645252..36648947,8	MCF-7	breast:
7	chr6:35994747..35997169-chr6:36562025..36564113,2	K562	blood:
8	chr6:36563235..36565666-chr6:36712198..36714107,2	K562	blood:
9	chr6:35994747..35997938-chr6:36562613..36566068,3	K562	blood:
10	chr6:36467629..36469288-chr6:36562211..36564432,2	K562	blood:
11	chr6:36560711..36564837-chr6:36645733..36649715,9	K562	blood:
12	chr6:36562081..36564755-chr6:36642636..36644724,2	K562	blood:
13	chr6:36562362..36564787-chr6:36830127..36831778,2	K562	blood:
14	chr6:36562412..36564652-chr6:36674547..36676281,2	K562	blood:
15	chr6:36473121..36475409-chr6:36563660..36565634,2	K562	blood:
16	chr6:36560285..36563984-chr6:36645642..36649715,8	K562	blood:
17	chr6:36334277..36337187-chr6:36562769..36565035,2	MCF-7	breast:
18	chr6:36562562..36564924-chr6:36814453..36817314,2	K562	blood:
19	chr6:36561980..36564185-chr6:36840792..36844090,3	K562	blood:
20	chr6:36340665..36342741-chr6:36562603..36564445,2	MCF-7	breast:
21	chr6:36488938..36493688-chr6:36561807..36564126,6	MCF-7	breast:
22	chr6:36510007..36526277-chr6:36558145..36566762,35	K562	blood:
23	chr6:36403741..36414959-chr6:36560215..36569964,50	K562	blood:
24	chr6:36511392..36518322-chr6:36560440..36567216,21	MCF-7	breast:
25	chr6:36406846..36414829-chr6:36558734..36566025,43	K562	blood:
26	chr6:36511879..36517279-chr6:36558264..36566013,19	MCF-7	breast:
27	chr6:36511832..36520020-chr6:36560637..36566762,23	K562	blood:
28	chr6:36487455..36494660-chr6:36559051..36563997,8	MCF-7	breast:
29	chr6:36559895..36571260-chr6:36642384..36648914,19	MCF-7	breast:
30	chr6:36562786..36564332-chr6:36928250..36929910,2	K562	blood:
31	chr6:36427110..36428848-chr6:36563217..36564833,2	K562	blood:
32	chr6:36563465..36565521-chr6:36853930..36855526,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112079	Chromatin interaction
ENSG00000239964	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000137168	Chromatin interaction
ENSG00000112062	Chromatin interaction
ENSG00000264878	Chromatin interaction
ENSG00000124762	Chromatin interaction
ENSG00000124772	Chromatin interaction
ENSG00000179165	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3756907	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4140594	0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4711454	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59108254	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60633269	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7776298	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36561000-36564000	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:36561000-36564400	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr6:36561000-36564600	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:36561000-36564600	Active TSS	Thymus	Thymus
5	chr6:36561000-36565000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:36561200-36564200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:36561200-36564200	Active TSS	Psoas Muscle	Psoas
8	chr6:36561200-36564400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:36561200-36564400	Active TSS	Brain Angular Gyrus	brain
10	chr6:36561200-36564400	Active TSS	Brain Anterior Caudate	brain
11	chr6:36561200-36564400	Active TSS	Brain Substantia Nigra	brain
12	chr6:36561200-36564400	Active TSS	Fetal Kidney	kidney
13	chr6:36561200-36564600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:36561200-36564600	Active TSS	H9 Cell Line	embryonic stem cell
15	chr6:36561200-36564600	Active TSS	Brain Cingulate Gyrus	brain
16	chr6:36561200-36564600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr6:36561200-36564600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:36561200-36564600	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr6:36561200-36564600	Active TSS	Esophagus	oesophagus
20	chr6:36561200-36564600	Active TSS	Left Ventricle	heart
21	chr6:36561200-36564600	Active TSS	Pancreas	Pancrea
22	chr6:36561200-36564600	Active TSS	Small Intestine	intestine
23	chr6:36561200-36564800	Active TSS	Colonic Mucosa	Colon
24	chr6:36561200-36564800	Active TSS	Stomach Mucosa	stomach
25	chr6:36561200-36565000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:36561200-36565000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:36561200-36565000	Active TSS	Colon Smooth Muscle	Colon
28	chr6:36561200-36565000	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr6:36561200-36565400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr6:36561200-36566600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:36561400-36564000	Active TSS	Spleen	Spleen
32	chr6:36561400-36564000	Active TSS	GM12878-XiMat	blood
33	chr6:36561400-36564200	Bivalent/Poised TSS	HepG2	liver
34	chr6:36561400-36564400	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr6:36561400-36564600	Active TSS	Lung	lung
36	chr6:36561400-36564600	Active TSS	Stomach Smooth Muscle	stomach
37	chr6:36561400-36565000	Active TSS	Right Ventricle	heart
38	chr6:36561400-36565200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:36561600-36564600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:36561600-36564600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:36561600-36564600	Active TSS	Brain Hippocampus Middle	brain
42	chr6:36561600-36564600	Active TSS	Fetal Stomach	stomach
43	chr6:36561600-36564600	Active TSS	Ovary	ovary
44	chr6:36561600-36564600	Active TSS	Placenta Amnion	Placenta Amnion
45	chr6:36561600-36564600	Active TSS	NHDF-Ad	bronchial
46	chr6:36561600-36565000	Active TSS	Aorta	Aorta
47	chr6:36561800-36564000	Active TSS	Primary T helper cells fromperipheralblood	blood
48	chr6:36561800-36564000	Active TSS	HMEC	breast
49	chr6:36561800-36564200	Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr6:36561800-36564200	Active TSS	Cortex derived primary cultured neurospheres	brain

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