Variant report

Variant	rs7776298
Chromosome Location	chr6:36548225-36548226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36522642..36525654-chr6:36546165..36549998,4	MCF-7	breast:
2	chr6:36543022..36549115-chr6:36560475..36565724,11	K562	blood:
3	chr6:36409367..36412337-chr6:36545232..36548992,4	MCF-7	breast:
4	chr6:36546247..36549201-chr6:36553046..36554863,2	K562	blood:
5	chr6:36541858..36549149-chr6:36558071..36568608,24	MCF-7	breast:
6	chr6:36546135..36548821-chr6:36719778..36721832,2	MCF-7	breast:
7	chr6:36528196..36530114-chr6:36547520..36549033,2	K562	blood:
8	chr6:36513307..36516814-chr6:36543552..36549139,6	MCF-7	breast:
9	chr6:36528875..36531304-chr6:36546279..36549068,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112079	Chromatin interaction
ENSG00000112081	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112078	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3756906	0.86[AMR][1000 genomes]
rs3756907	0.84[AMR][1000 genomes]
rs4140594	0.84[AMR][1000 genomes]
rs4711454	0.87[AMR][1000 genomes]
rs59108254	0.87[AMR][1000 genomes]
rs60633269	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36535200-36551200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:36544200-36548400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:36545000-36548400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr6:36545800-36548400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:36546400-36548400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:36547800-36550200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:36547800-36551200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:36547800-36551200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr6:36547800-36551200	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:36547800-36551200	Weak transcription	Brain Anterior Caudate	brain
11	chr6:36547800-36551200	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:36547800-36551200	Weak transcription	Fetal Kidney	kidney
13	chr6:36548000-36548400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:36548000-36548400	Enhancers	Rectal Smooth Muscle	rectum
15	chr6:36548000-36549600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:36548000-36551200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:36548000-36551200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:36548000-36551200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:36548000-36551200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:36548000-36551200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:36548000-36551200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:36548000-36551200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:36548000-36551200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:36548000-36551200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:36548000-36551200	Weak transcription	Fetal Intestine Large	intestine
26	chr6:36548000-36551200	Weak transcription	Fetal Thymus	thymus
27	chr6:36548000-36551200	Weak transcription	NHDF-Ad	bronchial
28	chr6:36548000-36551200	Weak transcription	NHEK	skin
29	chr6:36548000-36551200	Weak transcription	NHLF	lung
30	chr6:36548000-36553000	Weak transcription	HSMM	muscle
31	chr6:36548000-36553000	Weak transcription	HSMMtube	muscle
32	chr6:36548000-36553000	Weak transcription	NH-A	brain
33	chr6:36548200-36548400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:36548200-36548400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr6:36548200-36551200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:36548200-36551200	Weak transcription	Primary B cells from cord blood	blood
37	chr6:36548200-36551200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:36548200-36551200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:36548200-36551200	Weak transcription	Adipose Nuclei	Adipose
40	chr6:36548200-36551200	Weak transcription	Fetal Intestine Small	intestine
41	chr6:36548200-36551200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:36548200-36551200	Weak transcription	Osteobl	bone
43	chr6:36548200-36551400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:36548200-36551600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr6:36548200-36553000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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