Variant report

Variant	rs4711454
Chromosome Location	chr6:36555422-36555423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3756906	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3756907	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3819759	0.81[AMR][1000 genomes]
rs4140594	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59108254	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60633269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7776298	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36551600-36558000	Weak transcription	NHDF-Ad	bronchial
2	chr6:36551600-36559600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:36551600-36560000	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:36551600-36560600	Weak transcription	Fetal Intestine Small	intestine
5	chr6:36553400-36557400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:36553400-36558000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:36553400-36558000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:36553400-36558000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:36553400-36558000	Weak transcription	HSMMtube	muscle
10	chr6:36553400-36558000	Weak transcription	NH-A	brain
11	chr6:36553400-36561000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:36553800-36558000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:36553800-36558000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:36553800-36558000	Weak transcription	HSMM	muscle
15	chr6:36553800-36558000	Weak transcription	Osteobl	bone
16	chr6:36553800-36561000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:36554600-36561200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:36555400-36555600	Enhancers	Fetal Muscle Trunk	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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