Variant report

Variant	rs59108254
Chromosome Location	chr6:36576153-36576154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36575353..36578968-chr6:36688808..36692284,3	MCF-7	breast:
2	chr6:36460967..36463538-chr6:36574262..36576838,2	MCF-7	breast:
3	chr6:36574880..36577786-chr6:36720826..36723151,2	K562	blood:
4	chr6:36503698..36505309-chr6:36575807..36578359,2	MCF-7	breast:
5	chr6:36575316..36577688-chr6:36710838..36712742,2	K562	blood:
6	chr6:36575546..36577786-chr6:36721228..36723151,2	K562	blood:
7	chr6:36510024..36516034-chr6:36569455..36577118,9	MCF-7	breast:
8	chr6:36350275..36352895-chr6:36574833..36577389,2	MCF-7	breast:
9	chr6:36409159..36411359-chr6:36575323..36577978,2	K562	blood:
10	chr6:36575719..36578396-chr6:36703427..36706360,2	K562	blood:
11	chr6:36575587..36577672-chr6:36699166..36700977,3	MCF-7	breast:
12	chr6:36574853..36581451-chr6:36644915..36649997,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction
ENSG00000179165	Chromatin interaction
ENSG00000112079	Chromatin interaction
ENSG00000112078	Chromatin interaction
ENSG00000220349	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3756906	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3756907	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3819759	0.81[AMR][1000 genomes]
rs4140594	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4711454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60633269	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776298	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36566600-36577400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:36566800-36577800	Strong transcription	H9 Cell Line	embryonic stem cell
3	chr6:36566800-36582800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:36567000-36580400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:36567600-36578400	Genic enhancers	Liver	Liver
6	chr6:36568000-36576200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:36568000-36577800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:36568000-36581400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:36568200-36577400	Genic enhancers	NHEK	skin
10	chr6:36568200-36580200	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:36568600-36576200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr6:36568600-36577600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:36568600-36578000	Genic enhancers	HepG2	liver
14	chr6:36568600-36584600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:36568800-36581200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:36569000-36581600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:36569400-36576200	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:36569400-36576600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:36569400-36581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:36569600-36577400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:36569600-36577600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr6:36569600-36581400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:36569600-36585000	Strong transcription	Fetal Thymus	thymus
24	chr6:36570000-36581800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:36570200-36581200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:36570400-36577600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
27	chr6:36570400-36577800	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr6:36570400-36581600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:36570400-36584800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:36570600-36577800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:36570600-36582000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:36570800-36580200	Strong transcription	NH-A	brain
33	chr6:36571000-36581600	Strong transcription	Primary B cells from cord blood	blood
34	chr6:36571200-36581600	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:36571200-36582200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr6:36571400-36577800	Genic enhancers	Rectal Mucosa Donor 31	rectum
37	chr6:36571400-36577800	Genic enhancers	HMEC	breast
38	chr6:36571600-36576400	Strong transcription	Brain Anterior Caudate	brain
39	chr6:36571600-36585000	Strong transcription	Thymus	Thymus
40	chr6:36571800-36582200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:36572000-36578800	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr6:36572000-36579400	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr6:36572000-36581800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:36572000-36583200	Strong transcription	Fetal Stomach	stomach
45	chr6:36572600-36580400	Strong transcription	HUVEC	blood vessel
46	chr6:36572600-36581400	Strong transcription	Dnd41	blood
47	chr6:36572600-36582200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:36572800-36577200	Genic enhancers	Stomach Smooth Muscle	stomach
49	chr6:36572800-36577600	Genic enhancers	Left Ventricle	heart
50	chr6:36572800-36577800	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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