Variant report

Variant	rs3757551
Chromosome Location	chr7:121511088-121511089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10953948	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11543745	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12671267	0.81[EUR][1000 genomes]
rs12672519	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12673871	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16870718	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35807933	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3801374	0.80[AMR][1000 genomes]
rs3801377	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3801380	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965735	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6966138	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73717719	0.81[EUR][1000 genomes]
rs740965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7797043	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1802911	chr7:121489994-121524500	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121500800-121512800	Weak transcription	Aorta	Aorta
2	chr7:121508200-121512000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:121508600-121512200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr7:121510600-121512400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:121510800-121511600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:121510800-121511600	Enhancers	Fetal Brain Female	brain
7	chr7:121510800-121512200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:121510800-121512200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:121510800-121512400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:121510800-121512400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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