Variant report
| Variant | rs12673871 |
|---|---|
| Chromosome Location | chr7:121487204-121487205 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10225186 | 0.93[ASN][1000 genomes] |
| rs10270557 | 0.95[ASN][1000 genomes] |
| rs10953948 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10953949 | 0.95[ASN][1000 genomes] |
| rs10953950 | 0.93[ASN][1000 genomes] |
| rs11543745 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11982728 | 0.95[ASN][1000 genomes] |
| rs12671267 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16870718 | 0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs35807933 | 1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3757551 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3801380 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs58748383 | 0.81[EUR][1000 genomes] |
| rs6949816 | 0.95[ASN][1000 genomes] |
| rs6965735 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6966138 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73717719 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs740965 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7778688 | 0.95[ASN][1000 genomes] |
| rs7797092 | 0.95[ASN][1000 genomes] |
| rs7798109 | 0.95[ASN][1000 genomes] |
| rs917722 | 0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429808 | chr7:121384049-121600049 | Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv824292 | chr7:121485473-121494375 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:121486800-121488000 | Enhancers | Fetal Brain Male | brain |
