Variant report

Variant	rs10953949
Chromosome Location	chr7:121483856-121483857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AASS-1	chr7:121483505-121484225	NONHSAT123014

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10225186	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10270557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953948	0.99[ASN][1000 genomes]
rs10953950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11543745	0.99[ASN][1000 genomes]
rs11982728	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669706	0.88[JPT][hapmap]
rs12671267	0.98[ASN][1000 genomes]
rs12673871	0.95[ASN][1000 genomes]
rs16870718	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1916885	0.88[JPT][hapmap]
rs2191783	0.88[JPT][hapmap]
rs35807933	0.99[ASN][1000 genomes]
rs3801377	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs3801380	0.81[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs58748383	0.82[ASN][1000 genomes]
rs6949816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6971645	0.88[JPT][hapmap]
rs73717719	0.94[ASN][1000 genomes]
rs740965	0.81[CHB][hapmap];0.92[CHD][hapmap];0.94[JPT][hapmap]
rs7778688	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797043	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7797092	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798109	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917722	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9641678	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10953949	VSNL1	trans	parietal	SCAN
rs10953949	TSPAN12	cis	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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