Variant report

Variant	rs11982728
Chromosome Location	chr7:121473855-121473856
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10225186	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10270557	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953948	0.99[ASN][1000 genomes]
rs10953949	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10953950	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11543745	0.99[ASN][1000 genomes]
rs12671267	0.98[ASN][1000 genomes]
rs12673871	0.95[ASN][1000 genomes]
rs16870718	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35807933	0.99[ASN][1000 genomes]
rs58748383	0.82[ASN][1000 genomes]
rs6949816	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73717719	0.94[ASN][1000 genomes]
rs7778688	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7797043	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7797092	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798109	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917722	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121471400-121475600	Enhancers	Fetal Brain Male	brain
2	chr7:121471800-121477000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:121472400-121475000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:121472600-121474400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:121472600-121474600	Enhancers	Fetal Brain Female	brain
6	chr7:121472800-121479000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:121473800-121474600	Enhancers	Brain Germinal Matrix	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links