Variant report

Variant	rs3758714
Chromosome Location	chr11:76254824-76254825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10736806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10736807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10736808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10793161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10793162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10793168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10899214	0.84[ASN][1000 genomes]
rs3753052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4531498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4944109	1.00[AMR][1000 genomes]
rs4945089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6592634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6592636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6592637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7105308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7125744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7925129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7945460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1848387	chr11:76243699-76262652	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76205400-76255200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:76220000-76255600	Weak transcription	Small Intestine	intestine
3	chr11:76224400-76262600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:76224400-76263800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:76230000-76265600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:76233600-76258800	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr11:76233800-76258600	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:76233800-76260200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:76233800-76262000	Strong transcription	Placenta	Placenta
10	chr11:76233800-76262400	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:76233800-76262600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr11:76233800-76263200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:76234000-76262600	Strong transcription	Dnd41	blood
14	chr11:76234200-76262000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr11:76234800-76263000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:76236400-76255400	Weak transcription	HMEC	breast
17	chr11:76236400-76255600	Weak transcription	Esophagus	oesophagus
18	chr11:76236400-76255600	Weak transcription	Psoas Muscle	Psoas
19	chr11:76236400-76261800	Weak transcription	Stomach Mucosa	stomach
20	chr11:76237400-76261200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:76239000-76259800	Strong transcription	Primary B cells from peripheral blood	blood
22	chr11:76239000-76261600	Strong transcription	Liver	Liver
23	chr11:76239600-76259000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr11:76239600-76262000	Strong transcription	Primary T cells from cord blood	blood
25	chr11:76239600-76262200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:76239800-76259400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:76240800-76255400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:76245200-76255200	Weak transcription	Brain Germinal Matrix	brain
29	chr11:76246000-76257600	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr11:76246200-76257400	Strong transcription	Fetal Muscle Leg	muscle
31	chr11:76246400-76257600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:76246600-76260600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:76246800-76255400	Weak transcription	Fetal Brain Male	brain
34	chr11:76248200-76261400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:76248400-76259600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:76248400-76261600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:76248600-76255600	Weak transcription	HSMM	muscle
38	chr11:76248600-76256800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:76248600-76257400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:76250200-76258000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr11:76250200-76259200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:76250600-76257400	Strong transcription	GM12878-XiMat	blood
43	chr11:76251200-76255000	Weak transcription	NH-A	brain
44	chr11:76251600-76260400	Strong transcription	Fetal Lung	lung
45	chr11:76252000-76257800	Strong transcription	Primary hematopoietic stem cells	blood
46	chr11:76252000-76257800	Strong transcription	Fetal Intestine Large	intestine
47	chr11:76252000-76257800	Strong transcription	Fetal Muscle Trunk	muscle
48	chr11:76252000-76258000	Strong transcription	Brain Substantia Nigra	brain
49	chr11:76252000-76259200	Strong transcription	Primary B cells from cord blood	blood
50	chr11:76252000-76262000	Strong transcription	Primary T cells fromperipheralblood	blood

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