Variant report

Variant	rs7925129
Chromosome Location	chr11:76157686-76157687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76090234..76093573-chr11:76154824..76158196,8	MCF-7	breast:
2	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137492	Chromatin interaction
ENSG00000179240	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10736805	0.86[CHD][hapmap]
rs10736806	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10793162	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10793168	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899214	0.92[ASN][1000 genomes]
rs3753052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3758714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3758717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4531498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944109	1.00[AMR][1000 genomes]
rs4945089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7114796	0.83[ASN][1000 genomes]
rs7119444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7125744	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7938584	1.00[GIH][hapmap];1.00[EUR][1000 genomes]
rs7945460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76153800-76158800	Active TSS	GM12878-XiMat	blood
2	chr11:76154200-76157800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr11:76154200-76158000	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr11:76154600-76157800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:76154800-76157800	Active TSS	A549	lung
6	chr11:76155000-76157800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:76155000-76157800	Active TSS	Fetal Brain Female	brain
8	chr11:76155000-76158000	Active TSS	Muscle Satellite Cultured Cells	--
9	chr11:76155200-76157800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:76156400-76157800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:76156600-76157800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:76156600-76157800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:76156800-76157800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr11:76157000-76157800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:76157000-76157800	Flanking Active TSS	Dnd41	blood
16	chr11:76157000-76166400	Weak transcription	Small Intestine	intestine
17	chr11:76157200-76157800	Enhancers	Primary B cells from peripheral blood	blood
18	chr11:76157200-76157800	Enhancers	Liver	Liver
19	chr11:76157200-76158000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr11:76157200-76158000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:76157200-76158000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr11:76157200-76158000	Enhancers	Fetal Heart	heart
23	chr11:76157200-76158200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr11:76157200-76158200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr11:76157200-76158200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr11:76157200-76158200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:76157200-76159400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:76157200-76161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:76157200-76161600	Weak transcription	Lung	lung
30	chr11:76157200-76166400	Weak transcription	Ovary	ovary
31	chr11:76157200-76168400	Weak transcription	Psoas Muscle	Psoas
32	chr11:76157200-76183400	Weak transcription	Gastric	stomach
33	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
35	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
38	chr11:76157400-76157800	Enhancers	Primary B cells from cord blood	blood
39	chr11:76157400-76157800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:76157400-76157800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:76157400-76157800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr11:76157400-76157800	Enhancers	Brain Anterior Caudate	brain
43	chr11:76157400-76157800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:76157400-76157800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:76157400-76157800	Flanking Active TSS	Fetal Brain Male	brain
46	chr11:76157400-76157800	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr11:76157400-76157800	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr11:76157400-76157800	Enhancers	Stomach Smooth Muscle	stomach
49	chr11:76157400-76157800	Enhancers	Osteobl	bone
50	chr11:76157400-76158000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

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