Variant report
| Variant | rs7119444 |
|---|---|
| Chromosome Location | chr11:76124433-76124434 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:76124379..76127388-chr11:76154738..76157468,3 | MCF-7 | breast: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-111M22.2.1-1 | chr11:76121906-76125663 | NONHSAT023165 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000158636 | Chromatin interaction |
| ENSG00000255135 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10736805 | 0.89[ASN][1000 genomes] |
| rs10736806 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10736807 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs10793161 | 0.89[ASN][1000 genomes] |
| rs10793162 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs10793168 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs17811689 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2156709 | 0.91[ASN][1000 genomes] |
| rs2187468 | 0.91[ASN][1000 genomes] |
| rs2226894 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2618075 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2851148 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2851149 | 1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2851156 | 0.81[AMR][1000 genomes] |
| rs2851157 | 0.85[AMR][1000 genomes] |
| rs2851461 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2851478 | 0.85[AMR][1000 genomes] |
| rs3753052 | 1.00[CHB][hapmap];0.82[JPT][hapmap] |
| rs4945089 | 0.80[ASN][1000 genomes] |
| rs6592631 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6592634 | 0.80[ASN][1000 genomes] |
| rs6592636 | 0.80[ASN][1000 genomes] |
| rs6592637 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs7105308 | 0.80[ASN][1000 genomes] |
| rs7125744 | 0.86[JPT][hapmap] |
| rs7925129 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7945460 | 0.80[ASN][1000 genomes] |
| rs949149 | 0.91[ASN][1000 genomes] |
| rs949150 | 0.91[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:76121800-76124600 | Enhancers | Fetal Muscle Leg | muscle |
