Variant report

Variant	rs6592631
Chromosome Location	chr11:76100197-76100198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76091823..76095278-chr11:76097522..76100664,4	MCF-7	breast:
2	chr11:76096828..76101087-chr11:76152871..76156603,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137492	Chromatin interaction
ENSG00000179240	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17811689	0.95[AMR][1000 genomes]
rs2226894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618062	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2618071	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2618075	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618083	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2618093	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2851148	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851149	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851153	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2851156	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2851157	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2851158	0.86[EUR][1000 genomes]
rs2851461	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851478	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4944104	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4944109	0.84[CHB][hapmap]
rs6592630	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7119444	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7938584	0.84[CHB][hapmap]
rs7943642	0.84[AMR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76093000-76111000	Weak transcription	Aorta	Aorta
2	chr11:76093600-76110000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:76093800-76101600	Weak transcription	Fetal Kidney	kidney
4	chr11:76093800-76101800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:76093800-76102200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:76094000-76101400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:76094000-76102000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr11:76094000-76102000	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:76094200-76102000	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:76094200-76102200	Weak transcription	Brain Anterior Caudate	brain
11	chr11:76094200-76102400	Weak transcription	Hela-S3	cervix
12	chr11:76094200-76104800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:76094400-76102000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:76094400-76102200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:76094400-76103000	Weak transcription	Small Intestine	intestine
16	chr11:76094400-76103600	Weak transcription	Fetal Brain Female	brain
17	chr11:76094400-76104400	Weak transcription	Gastric	stomach
18	chr11:76094600-76102000	Weak transcription	Psoas Muscle	Psoas
19	chr11:76094600-76102200	Weak transcription	Spleen	Spleen
20	chr11:76094600-76104600	Weak transcription	Lung	lung
21	chr11:76095200-76100200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:76095200-76103400	Weak transcription	Primary B cells from cord blood	blood
23	chr11:76096200-76102000	Weak transcription	Brain Germinal Matrix	brain
24	chr11:76096200-76102200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr11:76096200-76103200	Weak transcription	Fetal Lung	lung
26	chr11:76097000-76101400	Weak transcription	Stomach Mucosa	stomach
27	chr11:76097200-76101200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:76097200-76122000	Weak transcription	Fetal Stomach	stomach
29	chr11:76097800-76102000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr11:76097800-76102400	Weak transcription	Fetal Intestine Small	intestine
31	chr11:76097800-76103400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr11:76098000-76102200	Weak transcription	HepG2	liver
33	chr11:76099000-76102000	Weak transcription	Pancreas	Pancrea
34	chr11:76099800-76102000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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