Variant report

Variant	rs2851153
Chromosome Location	chr11:76036053-76036054
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2226894	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2618062	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2618071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2618075	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2618083	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2618093	0.89[EUR][1000 genomes]
rs2851148	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2851149	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2851156	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2851157	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2851158	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851461	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2851478	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4944104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6592630	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6592631	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7943642	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv989053	chr11:76027846-76039082	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv524020	chr11:76033374-76047793	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76033400-76038600	Weak transcription	Spleen	Spleen
2	chr11:76033600-76038400	Weak transcription	Right Atrium	heart
3	chr11:76033600-76040200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:76033800-76040000	Weak transcription	Fetal Lung	lung
5	chr11:76034200-76038400	Weak transcription	Placenta	Placenta
6	chr11:76034200-76038400	Weak transcription	Left Ventricle	heart
7	chr11:76034200-76038600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:76034200-76038600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:76034200-76038800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:76034200-76040200	Weak transcription	Adipose Nuclei	Adipose
11	chr11:76034600-76040000	Weak transcription	Fetal Heart	heart
12	chr11:76035200-76036600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr11:76035200-76037000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:76035400-76036400	Enhancers	Primary hematopoietic stem cells	blood
15	chr11:76035400-76038200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:76035400-76038200	Weak transcription	K562	blood
17	chr11:76035400-76038800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr11:76035800-76040400	Weak transcription	Fetal Intestine Small	intestine
19	chr11:76036000-76036400	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:76036000-76036400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:76036000-76036600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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