Variant report

Variant	rs2618093
Chromosome Location	chr11:76084235-76084236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76082898..76084920-chr11:76155032..76156868,3	MCF-7	breast:
2	chr11:76083976..76087668-chr11:76154688..76156969,3	K562	blood:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17811689	0.86[AMR][1000 genomes]
rs2226894	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2618062	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2618071	0.89[EUR][1000 genomes]
rs2618075	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2618083	1.00[CEU][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2851148	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2851149	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2851153	0.89[EUR][1000 genomes]
rs2851156	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2851157	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2851158	0.89[EUR][1000 genomes]
rs2851461	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2851478	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4944104	0.89[EUR][1000 genomes]
rs6592630	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592631	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7943642	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76066200-76085800	Weak transcription	Esophagus	oesophagus
2	chr11:76066400-76089200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:76066400-76090000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:76066600-76090000	Weak transcription	Fetal Brain Female	brain
5	chr11:76067600-76085800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:76067600-76090400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:76067600-76091000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:76067800-76087400	Weak transcription	Colonic Mucosa	Colon
9	chr11:76067800-76090000	Weak transcription	Lung	lung
10	chr11:76072200-76090400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:76073600-76090000	Weak transcription	Primary B cells from cord blood	blood
12	chr11:76076000-76087400	Weak transcription	Dnd41	blood
13	chr11:76076400-76089800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:76076800-76086200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:76076800-76089600	Weak transcription	Fetal Thymus	thymus
16	chr11:76076800-76089800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:76077000-76090400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:76077000-76090400	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:76077600-76085800	Weak transcription	Gastric	stomach
20	chr11:76077600-76090000	Weak transcription	Placenta	Placenta
21	chr11:76078000-76087800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr11:76079800-76088000	Weak transcription	Fetal Lung	lung
23	chr11:76081000-76085800	Weak transcription	Left Ventricle	heart
24	chr11:76081000-76086200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr11:76081000-76087600	Weak transcription	Fetal Intestine Large	intestine
26	chr11:76081000-76090400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:76081200-76085800	Weak transcription	Ovary	ovary
28	chr11:76081200-76087400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:76081200-76090400	Weak transcription	Liver	Liver
30	chr11:76081200-76090400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:76081200-76090400	Weak transcription	Spleen	Spleen
32	chr11:76082400-76084400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr11:76082400-76090400	Weak transcription	Colon Smooth Muscle	Colon
34	chr11:76082400-76091000	Weak transcription	Aorta	Aorta
35	chr11:76082600-76086000	Weak transcription	Thymus	Thymus
36	chr11:76082600-76087400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:76082600-76090200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:76082600-76090200	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:76082600-76090200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:76082600-76090400	Weak transcription	Right Ventricle	heart
41	chr11:76082800-76084400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr11:76082800-76085400	Weak transcription	NHDF-Ad	bronchial
43	chr11:76082800-76085400	Weak transcription	Osteobl	bone
44	chr11:76082800-76085600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:76082800-76085800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:76082800-76085800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:76082800-76085800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:76082800-76085800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:76082800-76086000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:76082800-76086000	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links