Variant report

Variant	rs7943642
Chromosome Location	chr11:76042287-76042288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2226894	0.84[AMR][1000 genomes]
rs2618062	0.90[AMR][1000 genomes]
rs2618071	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2618075	0.84[AMR][1000 genomes]
rs2618083	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2618093	0.82[EUR][1000 genomes]
rs2851148	0.84[AMR][1000 genomes]
rs2851149	0.84[AMR][1000 genomes]
rs2851153	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851156	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2851157	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2851158	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851461	0.84[AMR][1000 genomes]
rs2851478	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4944104	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592630	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592631	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524020	chr11:76033374-76047793	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76039400-76048800	Weak transcription	Right Atrium	heart
2	chr11:76042000-76045000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:76042000-76045000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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