Variant report

Variant	rs2851158
Chromosome Location	chr11:76047265-76047266
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10736805	1.00[JPT][hapmap]
rs2226894	0.86[EUR][1000 genomes]
rs2618062	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2618071	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2618075	0.86[EUR][1000 genomes]
rs2618083	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2618093	0.89[EUR][1000 genomes]
rs2851148	0.86[EUR][1000 genomes]
rs2851149	0.86[EUR][1000 genomes]
rs2851153	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2851156	0.89[EUR][1000 genomes]
rs2851157	0.89[EUR][1000 genomes]
rs2851461	0.86[EUR][1000 genomes]
rs2851478	0.89[EUR][1000 genomes]
rs4944104	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592630	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6592631	0.86[EUR][1000 genomes]
rs7943642	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524020	chr11:76033374-76047793	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76039400-76048800	Weak transcription	Right Atrium	heart
2	chr11:76046600-76048000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr11:76046600-76048400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:76046600-76054600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:76046800-76051400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:76047000-76047400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr11:76047000-76051400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:76047200-76047400	Enhancers	Colonic Mucosa	Colon
9	chr11:76047200-76048200	Enhancers	Adipose Nuclei	Adipose
10	chr11:76047200-76048200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr11:76047200-76049000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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