Variant report

Variant	rs2618062
Chromosome Location	chr11:76064117-76064118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76063211..76065578-chr11:76066978..76069387,2	K562	blood:
2	chr11:76063904..76066072-chr11:76155439..76156956,2	MCF-7	breast:
3	chr11:76063211..76065578-chr11:76066828..76069387,3	K562	blood:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17811689	0.80[AMR][1000 genomes]
rs2226894	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2618071	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2618075	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2618083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2618093	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2851148	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2851149	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2851153	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2851156	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2851157	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851158	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2851461	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2851478	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944104	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6592630	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592631	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7943642	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv975204	chr11:76060911-76065114	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76048000-76064800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:76050000-76064600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:76050400-76064200	Weak transcription	Left Ventricle	heart
4	chr11:76050400-76064200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:76050400-76064200	Weak transcription	Thymus	Thymus
6	chr11:76050400-76064200	Weak transcription	NHLF	lung
7	chr11:76050400-76065000	Weak transcription	Colonic Mucosa	Colon
8	chr11:76050600-76064200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:76050600-76064600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:76050800-76064200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:76051000-76064200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:76051000-76064400	Weak transcription	Aorta	Aorta
13	chr11:76051200-76065000	Weak transcription	Gastric	stomach
14	chr11:76051200-76065200	Weak transcription	Right Ventricle	heart
15	chr11:76051200-76066200	Weak transcription	NHDF-Ad	bronchial
16	chr11:76052600-76065200	Weak transcription	HSMM	muscle
17	chr11:76053200-76064200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:76054200-76064200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:76054600-76065600	Weak transcription	Fetal Kidney	kidney
20	chr11:76054600-76080600	Weak transcription	Psoas Muscle	Psoas
21	chr11:76055200-76064600	Weak transcription	Fetal Brain Female	brain
22	chr11:76055400-76064200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:76055400-76064400	Weak transcription	Fetal Intestine Small	intestine
24	chr11:76055400-76065200	Weak transcription	HepG2	liver
25	chr11:76056800-76065000	Weak transcription	Esophagus	oesophagus
26	chr11:76056800-76080600	Weak transcription	Small Intestine	intestine
27	chr11:76057400-76065000	Weak transcription	Lung	lung
28	chr11:76058200-76064800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr11:76058400-76064600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr11:76058600-76065800	Weak transcription	Brain Germinal Matrix	brain
31	chr11:76058800-76064400	Weak transcription	HUVEC	blood vessel
32	chr11:76058800-76071400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr11:76059000-76064200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr11:76059000-76067200	Weak transcription	HSMMtube	muscle
35	chr11:76059000-76082000	Weak transcription	HMEC	breast
36	chr11:76059200-76064200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:76059200-76065000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:76059400-76064200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr11:76059400-76064600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:76059400-76065200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr11:76059600-76065000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:76059600-76065400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr11:76059800-76064600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr11:76059800-76065000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr11:76059800-76065200	Weak transcription	Fetal Heart	heart
46	chr11:76059800-76065800	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:76060000-76064600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr11:76060200-76064200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:76060200-76069000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:76060400-76064400	Weak transcription	Ovary	ovary

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