Variant report
| Variant | rs4944109 |
|---|---|
| Chromosome Location | chr11:76125373-76125374 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-RP11-111M22.2.1-1 | chr11:76121906-76125663 | NONHSAT023165 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000158636 | Chromatin interaction |
| ENSG00000255135 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10736806 | 1.00[AMR][1000 genomes] |
| rs10736807 | 1.00[AMR][1000 genomes] |
| rs10736808 | 1.00[AMR][1000 genomes] |
| rs10793161 | 1.00[AMR][1000 genomes] |
| rs10793162 | 1.00[AMR][1000 genomes] |
| rs10793168 | 1.00[AMR][1000 genomes] |
| rs2618075 | 0.84[CHB][hapmap] |
| rs2851148 | 0.92[CHB][hapmap] |
| rs2851152 | 0.90[EUR][1000 genomes] |
| rs3753052 | 1.00[AMR][1000 genomes] |
| rs3758714 | 1.00[AMR][1000 genomes] |
| rs3758717 | 1.00[AMR][1000 genomes] |
| rs4531498 | 1.00[AMR][1000 genomes] |
| rs4945089 | 1.00[AMR][1000 genomes] |
| rs6592631 | 0.84[CHB][hapmap] |
| rs6592634 | 1.00[AMR][1000 genomes] |
| rs6592636 | 1.00[AMR][1000 genomes] |
| rs6592637 | 1.00[AMR][1000 genomes] |
| rs7105308 | 1.00[AMR][1000 genomes] |
| rs7125744 | 1.00[AMR][1000 genomes] |
| rs7925129 | 1.00[AMR][1000 genomes] |
| rs7938584 | 0.84[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs7945460 | 1.00[AMR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
