Variant report

Variant	rs10793168
Chromosome Location	chr11:76158636-76158637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76155986..76157909-chr11:76158237..76161038,3	MCF-7	breast:
2	chr11:76152961..76155876-chr11:76158205..76163681,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158636	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10736806	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736807	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10736808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793161	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10793162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10899214	0.92[ASN][1000 genomes]
rs3753052	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3758714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3758717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4531498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944109	1.00[AMR][1000 genomes]
rs4945089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6592637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7114796	0.83[ASN][1000 genomes]
rs7119444	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7125744	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925129	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938584	1.00[EUR][1000 genomes]
rs7945460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050713	chr11:76147085-76267117	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76153800-76158800	Active TSS	GM12878-XiMat	blood
2	chr11:76157000-76166400	Weak transcription	Small Intestine	intestine
3	chr11:76157200-76159400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:76157200-76161400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:76157200-76161600	Weak transcription	Lung	lung
6	chr11:76157200-76166400	Weak transcription	Ovary	ovary
7	chr11:76157200-76168400	Weak transcription	Psoas Muscle	Psoas
8	chr11:76157200-76183400	Weak transcription	Gastric	stomach
9	chr11:76157200-76183600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:76157200-76183600	Weak transcription	Spleen	Spleen
11	chr11:76157200-76183800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:76157200-76190200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:76157200-76191200	Weak transcription	Stomach Mucosa	stomach
14	chr11:76157400-76159000	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:76157400-76159200	Weak transcription	Left Ventricle	heart
16	chr11:76157400-76159400	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:76157400-76159600	Weak transcription	Adipose Nuclei	Adipose
18	chr11:76157400-76161400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:76157400-76161400	Weak transcription	Thymus	Thymus
20	chr11:76157400-76161600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:76157400-76164000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:76157400-76164000	Weak transcription	NHDF-Ad	bronchial
23	chr11:76157400-76164200	Weak transcription	Fetal Kidney	kidney
24	chr11:76157400-76165800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:76157400-76169800	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:76157400-76171000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:76157400-76174800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:76157400-76179800	Weak transcription	HSMMtube	muscle
29	chr11:76157400-76183400	Weak transcription	Right Ventricle	heart
30	chr11:76157400-76183600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:76157400-76183600	Weak transcription	Esophagus	oesophagus
32	chr11:76157400-76190200	Weak transcription	Colonic Mucosa	Colon
33	chr11:76157600-76173600	Weak transcription	Brain Substantia Nigra	brain
34	chr11:76157800-76158800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:76157800-76159000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:76157800-76159200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr11:76157800-76159200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:76157800-76159600	Weak transcription	Primary B cells from cord blood	blood
39	chr11:76157800-76161000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:76157800-76161200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr11:76157800-76161400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr11:76157800-76161600	Weak transcription	Fetal Intestine Small	intestine
43	chr11:76157800-76161600	Weak transcription	Fetal Stomach	stomach
44	chr11:76157800-76163000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:76157800-76166200	Weak transcription	NHLF	lung
46	chr11:76157800-76166400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:76157800-76169200	Weak transcription	Brain Anterior Caudate	brain
48	chr11:76157800-76174800	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr11:76158000-76159000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:76158000-76159000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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