Variant report

Variant	rs377343668
Chromosome Location	chr9:15510200-15510201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15421340..15424109-chr9:15510012..15511838,2	K562	blood:
2	chr9:15509318..15512022-chr9:15550389..15555494,9	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TTC39B-5	chr9:15510115-15510327	NONHSAT130267
2	lnc-TTC39B-5	chr9:15510115-15510324	NONHSAT130268
3	lnc-TTC39B-5	chr9:15510115-15510327	NONHSAT130269

Variant related genes	Relation type
ENSG00000164989	Chromatin interaction
ENSG00000164975	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517975	chr9:15286446-15534070	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv892628	chr9:15420805-15528290	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3440011	chr9:15509577-15512125	Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:157 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15507600-15510200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
2	chr9:15508200-15510200	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr9:15508200-15511800	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr9:15508400-15511400	Active TSS	Brain Cingulate Gyrus	brain
5	chr9:15508600-15513200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr9:15508800-15511400	Active TSS	Brain Angular Gyrus	brain
7	chr9:15508800-15511800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:15509000-15510200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr9:15509000-15510200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
10	chr9:15509000-15511400	Active TSS	GM12878-XiMat	blood
11	chr9:15509000-15511600	Active TSS	Right Atrium	heart
12	chr9:15509000-15511800	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr9:15509200-15510200	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr9:15509200-15510200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr9:15509200-15510200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr9:15509200-15510200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr9:15509200-15510200	Active TSS	Fetal Brain Male	brain
18	chr9:15509200-15511600	Active TSS	K562	blood
19	chr9:15509200-15511800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:15509200-15511800	Active TSS	Stomach Smooth Muscle	stomach
21	chr9:15509200-15511800	Active TSS	NHLF	lung
22	chr9:15509400-15510200	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr9:15509400-15510200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
24	chr9:15509400-15510200	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr9:15509400-15510200	Flanking Active TSS	HMEC	breast
26	chr9:15509400-15510200	Flanking Active TSS	NH-A	brain
27	chr9:15509400-15511200	Active TSS	Primary T cells fromperipheralblood	blood
28	chr9:15509400-15511600	Active TSS	Ovary	ovary
29	chr9:15509400-15511800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr9:15509400-15511800	Active TSS	Muscle Satellite Cultured Cells	--
31	chr9:15509400-15512000	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr9:15509600-15510200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
33	chr9:15509600-15510200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:15509600-15510200	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr9:15509600-15510200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr9:15509600-15511400	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr9:15509600-15511400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:15509600-15511400	Active TSS	Fetal Stomach	stomach
39	chr9:15509600-15511400	Active TSS	Fetal Thymus	thymus
40	chr9:15509600-15511400	Active TSS	Hela-S3	cervix
41	chr9:15509600-15511600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:15509600-15511600	Active TSS	Fetal Brain Female	brain
43	chr9:15509600-15511600	Active TSS	A549	lung
44	chr9:15509600-15511800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:15509600-15511800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr9:15509600-15511800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:15509600-15511800	Active TSS	Aorta	Aorta
48	chr9:15509600-15511800	Active TSS	Brain Substantia Nigra	brain
49	chr9:15509600-15511800	Active TSS	Fetal Muscle Leg	muscle
50	chr9:15509600-15511800	Active TSS	Thymus	Thymus

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