Variant report

Variant	rs3784812
Chromosome Location	chr15:73659194-73659195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2554058	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs477377	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488784	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs513042	0.93[AFR][1000 genomes]
rs525964	0.92[AFR][1000 genomes]
rs547338	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs559632	0.91[AFR][1000 genomes]
rs568760	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73658200-73659200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:73658400-73659400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
3	chr15:73658600-73659200	Flanking Active TSS	Right Ventricle	heart
4	chr15:73658600-73659400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
5	chr15:73658600-73659400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
6	chr15:73658600-73660000	Active TSS	Fetal Heart	heart
7	chr15:73658600-73661800	Active TSS	Right Atrium	heart
8	chr15:73658800-73659400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:73658800-73659600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
10	chr15:73658800-73660000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr15:73658800-73660000	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:73659000-73659200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
13	chr15:73659000-73659200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr15:73659000-73659200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:73659000-73659200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:73659000-73659200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:73659000-73659200	Flanking Active TSS	Left Ventricle	heart
18	chr15:73659000-73659400	Bivalent Enhancer	Fetal Brain Male	brain
19	chr15:73659000-73659600	Active TSS	H9 Cell Line	embryonic stem cell
20	chr15:73659000-73659600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
21	chr15:73659000-73659600	Enhancers	Pancreas	Pancrea
22	chr15:73659000-73660000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr15:73659000-73660000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:73659000-73660600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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