Variant report

Variant	rs559632
Chromosome Location	chr15:73631557-73631558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73620319..73622578-chr15:73631546..73634347,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2247424	0.90[ASN][1000 genomes]
rs2554058	0.91[AFR][1000 genomes]
rs3784812	0.91[AFR][1000 genomes]
rs477377	0.91[AFR][1000 genomes]
rs488784	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs497859	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs512943	0.90[ASN][1000 genomes]
rs513042	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs525964	0.98[AFR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs547338	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs568760	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73617800-73634600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr15:73621200-73632600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:73621200-73634000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:73622000-73634000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:73622200-73634400	Weak transcription	Brain Germinal Matrix	brain
6	chr15:73623600-73635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:73623800-73632000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:73624000-73635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:73624600-73635200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:73624600-73635600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:73624800-73632400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:73624800-73632600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr15:73626000-73637800	Enhancers	Fetal Heart	heart
14	chr15:73628200-73634200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:73628200-73635600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:73628400-73631800	Weak transcription	Right Atrium	heart
17	chr15:73628400-73634400	Weak transcription	Fetal Brain Female	brain
18	chr15:73628400-73635000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr15:73628800-73634400	Weak transcription	Fetal Brain Male	brain
20	chr15:73630800-73640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr15:73631200-73631800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:73631400-73631800	Enhancers	Left Ventricle	heart
23	chr15:73631400-73632800	Enhancers	Right Ventricle	heart

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