Variant report

Variant	rs488784
Chromosome Location	chr15:73635361-73635362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2554058	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs3784812	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs477377	0.83[ASW][hapmap];0.97[LWK][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs497859	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs512943	0.83[CHD][hapmap]
rs513042	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs525964	0.99[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs547338	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs559632	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs568760	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73623600-73635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr15:73624000-73635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:73624600-73635600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr15:73626000-73637800	Enhancers	Fetal Heart	heart
5	chr15:73628200-73635600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:73630800-73640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:73632400-73636200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:73633200-73635600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:73633600-73636200	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr15:73634000-73635400	Enhancers	Right Atrium	heart
11	chr15:73634000-73636000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:73634000-73636000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:73634600-73636000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:73634800-73635600	Weak transcription	Brain Germinal Matrix	brain
15	chr15:73634800-73635600	Weak transcription	Fetal Brain Female	brain
16	chr15:73634800-73636600	Weak transcription	Left Ventricle	heart
17	chr15:73635000-73635600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr15:73635000-73635600	Weak transcription	Fetal Brain Male	brain
19	chr15:73635000-73635800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:73635000-73636400	Weak transcription	Right Ventricle	heart
21	chr15:73635200-73636200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:73635200-73646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links