Variant report

Variant	rs568760
Chromosome Location	chr15:73644396-73644397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73639515..73641596-chr15:73642543..73644580,2	MCF-7	breast:
2	chr15:73644236..73646707-chr15:73654273..73657085,2	MCF-7	breast:
3	chr15:73625970..73628583-chr15:73644302..73646337,2	MCF-7	breast:
4	chr15:73644157..73645827-chr15:73659799..73662311,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138622	Chromatin interaction
ENSG00000259650	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2247424	0.84[ASN][1000 genomes]
rs2554058	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs3784812	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs477377	0.83[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs488784	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs497859	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs512943	0.80[CHB][hapmap];0.91[CHD][hapmap];0.84[ASN][1000 genomes]
rs513042	1.00[CEU][hapmap];0.86[CHB][hapmap];0.99[AFR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs525964	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs547338	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs559632	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73635200-73646600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:73636000-73645800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:73636000-73646400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:73636200-73646000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr15:73636400-73644400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:73637200-73645800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:73641400-73646000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:73641600-73645800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:73642400-73645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:73642400-73646400	Enhancers	Right Ventricle	heart
11	chr15:73643200-73645000	Enhancers	Right Atrium	heart
12	chr15:73643200-73645400	Enhancers	Fetal Brain Male	brain
13	chr15:73643400-73648400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:73643800-73645000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:73644000-73645000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:73644000-73645400	Flanking Active TSS	Fetal Heart	heart
17	chr15:73644000-73647000	Enhancers	Left Ventricle	heart
18	chr15:73644200-73644400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:73644200-73644600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:73644200-73644600	Enhancers	Brain Anterior Caudate	brain
21	chr15:73644200-73644800	Enhancers	Brain Angular Gyrus	brain
22	chr15:73644200-73645000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:73644200-73645000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
24	chr15:73644200-73645000	Bivalent Enhancer	Brain Hippocampus Middle	brain
25	chr15:73644200-73645000	Enhancers	Fetal Brain Female	brain

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