Variant report

Variant rs3787499
Chromosome Location chr20:23616807-23616808
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:23600600-23617000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr20:23606600-23617000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr20:23610200-23617000 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr20:23610200-23617000 Weak transcription K562 blood
5 chr20:23610400-23618200 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr20:23610800-23617400 Weak transcription H9 Cell Line embryonic stem cell
7 chr20:23612000-23617000 Genic enhancers Fetal Muscle Trunk muscle
8 chr20:23612600-23617200 Genic enhancers Fetal Muscle Leg muscle
9 chr20:23612800-23617200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
10 chr20:23613800-23617200 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr20:23614600-23617200 Genic enhancers Gastric stomach
12 chr20:23614600-23617400 Transcr. at gene 5' and 3' Ganglion Eminence derived primary cultured neurospheres brain
13 chr20:23614800-23617200 Genic enhancers Lung lung
14 chr20:23614800-23617200 Genic enhancers Spleen Spleen
15 chr20:23614800-23617400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
16 chr20:23614800-23617400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
17 chr20:23615000-23617000 Transcr. at gene 5' and 3' Skeletal Muscle Male skeletal muscle
18 chr20:23615000-23618000 Transcr. at gene 5' and 3' Cortex derived primary cultured neurospheres brain
19 chr20:23615200-23617000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr20:23615200-23617000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
21 chr20:23615200-23617000 Transcr. at gene 5' and 3' HepG2 liver
22 chr20:23615400-23617200 Enhancers Placenta Placenta
23 chr20:23615600-23617000 Genic enhancers Fetal Lung lung
24 chr20:23615600-23617200 Enhancers HUVEC blood vessel
25 chr20:23615600-23617400 Transcr. at gene 5' and 3' H1 Derived Mesenchymal Stem Cells ES cell derived
26 chr20:23615600-23617400 Transcr. at gene 5' and 3' Primary monocytes fromperipheralblood blood
27 chr20:23615800-23617200 Genic enhancers Aorta Aorta
28 chr20:23615800-23617200 Enhancers Fetal Brain Male brain
29 chr20:23615800-23617800 Flanking Active TSS Adipose Nuclei Adipose
30 chr20:23615800-23618000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
31 chr20:23616000-23617000 Enhancers Breast Myoepithelial Primary Cells Breast
32 chr20:23616000-23617000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
33 chr20:23616000-23617000 Genic enhancers Fetal Stomach stomach
34 chr20:23616000-23617000 Enhancers Small Intestine intestine
35 chr20:23616000-23617000 Enhancers Stomach Mucosa stomach
36 chr20:23616000-23617000 Active TSS GM12878-XiMat blood
37 chr20:23616000-23617000 Enhancers Osteobl bone
38 chr20:23616000-23617200 Weak transcription Brain Angular Gyrus brain
39 chr20:23616000-23617400 Weak transcription Fetal Kidney kidney
40 chr20:23616000-23617600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr20:23616000-23617800 Flanking Active TSS Muscle Satellite Cultured Cells --
42 chr20:23616200-23617000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr20:23616200-23617000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
44 chr20:23616200-23617000 Active TSS Brain Anterior Caudate brain
45 chr20:23616200-23617200 Transcr. at gene 5' and 3' Right Ventricle heart
46 chr20:23616200-23617200 Enhancers Sigmoid Colon Sigmoid Colon
47 chr20:23616200-23617400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr20:23616400-23617200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
49 chr20:23616400-23617600 Flanking Active TSS Duodenum Mucosa Duodenum
50 chr20:23616400-23617800 Flanking Active TSS Monocytes-CD14+_RO01746 blood

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