Variant report

Variant rs3827142
Chromosome Location chr20:23617007-23617008
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:23610400-23618200 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr20:23610800-23617400 Weak transcription H9 Cell Line embryonic stem cell
3 chr20:23612600-23617200 Genic enhancers Fetal Muscle Leg muscle
4 chr20:23612800-23617200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr20:23613800-23617200 Weak transcription Pancreatic Islets Pancreatic Islet
6 chr20:23614600-23617200 Genic enhancers Gastric stomach
7 chr20:23614600-23617400 Transcr. at gene 5' and 3' Ganglion Eminence derived primary cultured neurospheres brain
8 chr20:23614800-23617200 Genic enhancers Lung lung
9 chr20:23614800-23617200 Genic enhancers Spleen Spleen
10 chr20:23614800-23617400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
11 chr20:23614800-23617400 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
12 chr20:23615000-23618000 Transcr. at gene 5' and 3' Cortex derived primary cultured neurospheres brain
13 chr20:23615400-23617200 Enhancers Placenta Placenta
14 chr20:23615600-23617200 Enhancers HUVEC blood vessel
15 chr20:23615600-23617400 Transcr. at gene 5' and 3' H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr20:23615600-23617400 Transcr. at gene 5' and 3' Primary monocytes fromperipheralblood blood
17 chr20:23615800-23617200 Genic enhancers Aorta Aorta
18 chr20:23615800-23617200 Enhancers Fetal Brain Male brain
19 chr20:23615800-23617800 Flanking Active TSS Adipose Nuclei Adipose
20 chr20:23615800-23618000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
21 chr20:23616000-23617200 Weak transcription Brain Angular Gyrus brain
22 chr20:23616000-23617400 Weak transcription Fetal Kidney kidney
23 chr20:23616000-23617600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr20:23616000-23617800 Flanking Active TSS Muscle Satellite Cultured Cells --
25 chr20:23616200-23617200 Transcr. at gene 5' and 3' Right Ventricle heart
26 chr20:23616200-23617200 Enhancers Sigmoid Colon Sigmoid Colon
27 chr20:23616200-23617400 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr20:23616400-23617200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
29 chr20:23616400-23617600 Flanking Active TSS Duodenum Mucosa Duodenum
30 chr20:23616400-23617800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
31 chr20:23616400-23618600 Active TSS Brain Hippocampus Middle brain
32 chr20:23616600-23617200 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr20:23616600-23617200 Flanking Active TSS Brain Cingulate Gyrus brain
34 chr20:23616600-23617400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr20:23616600-23617400 Flanking Active TSS Duodenum Smooth Muscle Duodenum
36 chr20:23616600-23617400 Flanking Active TSS Left Ventricle heart
37 chr20:23616600-23617400 Flanking Active TSS Psoas Muscle Psoas
38 chr20:23616600-23617400 Flanking Active TSS Right Atrium heart
39 chr20:23616600-23617600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr20:23616600-23617600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr20:23616600-23617600 Flanking Active TSS Pancreas Pancrea
42 chr20:23616600-23617600 Enhancers Placenta Amnion Placenta Amnion
43 chr20:23616600-23617600 Flanking Active TSS NHEK skin
44 chr20:23616600-23617800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
45 chr20:23616600-23617800 Flanking Active TSS Fetal Thymus thymus
46 chr20:23616600-23617800 Flanking Active TSS Stomach Smooth Muscle stomach
47 chr20:23616600-23617800 Flanking Active TSS HSMM muscle
48 chr20:23616800-23617200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr20:23616800-23617200 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
50 chr20:23616800-23617200 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell

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