Variant report

Variant	rs3791806
Chromosome Location	chr2:191182081-191182082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191170524..191172788-chr2:191180838..191183387,2	K562	blood:
2	chr2:190952176..190953919-chr2:191181749..191183612,2	MCF-7	breast:
3	chr2:191176802..191182284-chr2:191182793..191185787,7	MCF-7	breast:
4	chr2:191170524..191173911-chr2:191180343..191183387,4	K562	blood:

Variant related genes	Relation type
ENSG00000198130	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10191068	0.82[CEU][hapmap]
rs10209516	0.82[CEU][hapmap]
rs10209984	0.82[CEU][hapmap]
rs1058180	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs10931450	0.82[AMR][1000 genomes]
rs11683636	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11684995	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11685119	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11689196	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11692448	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11894667	0.81[CEU][hapmap]
rs11894766	0.82[CEU][hapmap]
rs13415995	0.82[CEU][hapmap]
rs16832420	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs16832512	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1866849	0.82[CEU][hapmap]
rs188339	0.81[CEU][hapmap]
rs2016037	0.80[EUR][1000 genomes]
rs2028431	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2067398	0.82[EUR][1000 genomes]
rs2067402	0.84[AMR][1000 genomes]
rs2067411	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs2067418	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2067419	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2099127	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2136567	0.81[CEU][hapmap]
rs2136568	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs2136570	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2136571	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2244076	0.86[CEU][hapmap]
rs2256301	0.82[CEU][hapmap]
rs2353890	0.82[CEU][hapmap]
rs2354871	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2562796	0.81[CEU][hapmap]
rs2582742	0.81[CEU][hapmap]
rs2582743	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2582744	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2582745	0.83[EUR][1000 genomes]
rs2582747	0.85[EUR][1000 genomes]
rs2582749	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2582753	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2664241	0.82[CEU][hapmap]
rs2664256	0.83[EUR][1000 genomes]
rs2664261	0.85[EUR][1000 genomes]
rs2664274	0.82[CEU][hapmap]
rs2664275	0.81[CHB][hapmap]
rs291402	0.82[CEU][hapmap]
rs291411	0.82[AMR][1000 genomes]
rs291418	0.81[CEU][hapmap]
rs291423	0.81[CEU][hapmap]
rs291424	0.82[CEU][hapmap]
rs291434	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs291435	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs291436	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs291437	0.86[EUR][1000 genomes]
rs291438	0.86[EUR][1000 genomes]
rs291439	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs291440	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs291441	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs291442	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs291446	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs291450	0.83[EUR][1000 genomes]
rs291451	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs291455	0.83[EUR][1000 genomes]
rs291463	0.80[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2919676	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35214387	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3791788	0.82[CEU][hapmap]
rs3791792	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3791800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3791805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3791815	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4146044	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4853684	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[EUR][1000 genomes]
rs4853685	0.81[CEU][hapmap]
rs4853687	0.81[CEU][hapmap]
rs4853689	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4853693	0.93[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55684836	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55742982	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55815425	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56742312	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57199157	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58400804	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60068799	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60469543	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60986316	0.81[EUR][1000 genomes]
rs61038868	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6434381	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6434382	0.85[EUR][1000 genomes]
rs66867328	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6723792	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6752703	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6753459	0.81[CEU][hapmap]
rs67791002	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs713425	0.81[CEU][hapmap]
rs72625302	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72627903	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72627904	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72627905	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72627906	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7562807	0.81[CEU][hapmap]
rs7565423	0.82[CEU][hapmap]
rs7567973	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7573689	0.82[CEU][hapmap]
rs7574028	0.82[CEU][hapmap]
rs7599085	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs760307	0.95[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3791806	INPP1	Cis_1M	lymphoblastoid	RTeQTL
rs3791806	INPP1	cis	multi-tissue	Pritchard
rs3791806	HIBCH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191116600-191183200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:191117400-191183600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr2:191135600-191183200	Weak transcription	Fetal Brain Male	brain
4	chr2:191137400-191183200	Weak transcription	A549	lung
5	chr2:191141800-191183000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:191143000-191183000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:191145600-191183200	Weak transcription	HUVEC	blood vessel
8	chr2:191145800-191183000	Weak transcription	HMEC	breast
9	chr2:191149200-191183200	Weak transcription	Fetal Kidney	kidney
10	chr2:191151000-191182800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr2:191151000-191183000	Weak transcription	Esophagus	oesophagus
12	chr2:191151400-191183000	Weak transcription	Gastric	stomach
13	chr2:191151400-191183000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr2:191151400-191183600	Weak transcription	Thymus	Thymus
15	chr2:191153400-191182800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr2:191161400-191183600	Weak transcription	Ovary	ovary
17	chr2:191162200-191182200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:191165400-191183000	Weak transcription	Fetal Brain Female	brain
19	chr2:191166200-191183200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr2:191166600-191182800	Weak transcription	Right Atrium	heart
21	chr2:191167000-191183000	Weak transcription	Brain Germinal Matrix	brain
22	chr2:191167200-191182800	Weak transcription	Right Ventricle	heart
23	chr2:191167600-191183200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr2:191168000-191183000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:191168000-191183200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr2:191168600-191183000	Weak transcription	Fetal Lung	lung
27	chr2:191171400-191183000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr2:191171600-191182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr2:191171600-191183000	Weak transcription	Lung	lung
30	chr2:191171800-191182800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr2:191172600-191183600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:191173600-191183000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr2:191173800-191183200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr2:191174800-191183000	Weak transcription	Left Ventricle	heart
35	chr2:191175000-191182800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr2:191175000-191182800	Weak transcription	Fetal Thymus	thymus
37	chr2:191175000-191183000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr2:191175400-191182800	Weak transcription	Fetal Intestine Large	intestine
39	chr2:191175600-191183000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr2:191175600-191183000	Weak transcription	Placenta	Placenta
41	chr2:191175600-191183200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr2:191175600-191183200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr2:191175800-191183000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr2:191175800-191183000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr2:191175800-191183000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr2:191177000-191182200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr2:191177000-191183000	Weak transcription	Psoas Muscle	Psoas
48	chr2:191177200-191182200	Weak transcription	Duodenum Mucosa	Duodenum
49	chr2:191177200-191183000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr2:191177400-191182200	Weak transcription	Fetal Intestine Small	intestine

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