Variant report

Variant	rs60986316
Chromosome Location	chr2:191237953-191237954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10931450	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11689196	0.88[EUR][1000 genomes]
rs2016037	0.91[EUR][1000 genomes]
rs2028431	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2067398	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2067402	0.91[EUR][1000 genomes]
rs2067411	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2067418	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2067419	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2067454	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2354871	0.86[EUR][1000 genomes]
rs2582753	0.91[EUR][1000 genomes]
rs291463	0.81[EUR][1000 genomes]
rs3791806	0.81[EUR][1000 genomes]
rs3791813	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs3791815	0.91[EUR][1000 genomes]
rs4853693	0.81[EUR][1000 genomes]
rs57199157	0.86[EUR][1000 genomes]
rs58400804	0.86[EUR][1000 genomes]
rs67791002	0.87[EUR][1000 genomes]
rs72627906	0.91[EUR][1000 genomes]
rs7567973	0.86[EUR][1000 genomes]
rs760307	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs60986316	HIBCH	cis	Thyroid	GTEx

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191211400-191238000	Weak transcription	Hela-S3	cervix
2	chr2:191219600-191243800	Weak transcription	Gastric	stomach
3	chr2:191225000-191242800	Weak transcription	Placenta	Placenta
4	chr2:191225200-191238200	Weak transcription	NHEK	skin
5	chr2:191225200-191242800	Weak transcription	Fetal Kidney	kidney
6	chr2:191225200-191244000	Weak transcription	Fetal Heart	heart
7	chr2:191225200-191244800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:191225400-191239200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr2:191227400-191244400	Weak transcription	A549	lung
10	chr2:191231800-191247800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr2:191234600-191242800	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr2:191235000-191242800	Weak transcription	NHDF-Ad	bronchial
13	chr2:191235800-191238400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr2:191235800-191239000	Weak transcription	HUVEC	blood vessel
15	chr2:191235800-191242600	Weak transcription	K562	blood
16	chr2:191236000-191242000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:191236000-191242800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:191236000-191244200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:191236200-191238400	Weak transcription	Esophagus	oesophagus
20	chr2:191236200-191238600	Weak transcription	Colonic Mucosa	Colon
21	chr2:191236200-191238600	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:191236200-191239200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr2:191236200-191239400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr2:191236200-191241000	Weak transcription	Pancreas	Pancrea
25	chr2:191236200-191242800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:191236200-191243400	Weak transcription	Lung	lung
27	chr2:191236200-191243400	Weak transcription	Right Ventricle	heart
28	chr2:191236200-191243800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr2:191236200-191244200	Weak transcription	Left Ventricle	heart
30	chr2:191236200-191244600	Weak transcription	Spleen	Spleen
31	chr2:191236200-191244800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr2:191236400-191238200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr2:191236400-191238200	Weak transcription	Primary B cells from cord blood	blood
34	chr2:191236400-191238400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr2:191236400-191238600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:191236400-191241400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr2:191236400-191242600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr2:191236400-191242800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr2:191236400-191243600	Weak transcription	Adipose Nuclei	Adipose
40	chr2:191236400-191243600	Weak transcription	Osteobl	bone
41	chr2:191236400-191243800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr2:191236400-191244000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:191236400-191245400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:191236600-191238200	Weak transcription	Fetal Stomach	stomach
45	chr2:191236600-191240200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr2:191237000-191243400	Weak transcription	Fetal Muscle Leg	muscle
47	chr2:191237200-191246000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr2:191237400-191244400	Weak transcription	Fetal Lung	lung
49	chr2:191237600-191240800	Weak transcription	Liver	Liver
50	chr2:191237800-191241000	Weak transcription	Stomach Mucosa	stomach

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