Variant report

Variant	rs57199157
Chromosome Location	chr2:191195482-191195483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191193453..191196089-chr2:191197942..191200892,2	K562	blood:
2	chr2:191183187..191186051-chr2:191191939..191195673,3	K562	blood:

Variant related genes	Relation type
ENSG00000198130	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10931450	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11683636	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11684995	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11685119	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11689196	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11692448	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16832512	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2016037	0.85[EUR][1000 genomes]
rs2028431	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2067398	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2067402	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2067411	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2067418	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2067419	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2099127	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2136568	0.82[EUR][1000 genomes]
rs2136570	0.82[EUR][1000 genomes]
rs2136571	0.82[EUR][1000 genomes]
rs2354871	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2582747	0.80[EUR][1000 genomes]
rs2582749	0.80[EUR][1000 genomes]
rs2582753	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2664261	0.80[EUR][1000 genomes]
rs291434	0.82[EUR][1000 genomes]
rs291435	0.82[EUR][1000 genomes]
rs291436	0.82[EUR][1000 genomes]
rs291437	0.82[EUR][1000 genomes]
rs291438	0.82[EUR][1000 genomes]
rs291439	0.82[EUR][1000 genomes]
rs291440	0.82[EUR][1000 genomes]
rs291441	0.82[EUR][1000 genomes]
rs291442	0.82[EUR][1000 genomes]
rs291463	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2919676	0.83[ASN][1000 genomes]
rs35214387	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3791792	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3791800	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3791805	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791806	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3791813	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3791815	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4146044	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4853689	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4853693	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55684836	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55742982	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56742312	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58400804	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60068799	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60469543	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60986316	0.86[EUR][1000 genomes]
rs61038868	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6434381	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs66867328	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6723792	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6752703	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67791002	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72625302	0.82[ASN][1000 genomes]
rs72627903	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72627904	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72627905	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72627906	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7567973	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7599085	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs760307	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs57199157	INPP1	Cis_1M	lymphoblastoid	RTeQTL
rs57199157	HIBCH	cis	Thyroid	GTEx
rs57199157	HIBCH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191191600-191208000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:191194600-191196000	Enhancers	K562	blood

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