Variant report

Variant	rs379689
Chromosome Location	chr8:78464888-78464889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1510128	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1688065	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs264785	0.89[ASN][1000 genomes]
rs264786	0.88[ASN][1000 genomes]
rs264816	0.94[ASN][1000 genomes]
rs34384008	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs364875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365193	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs366962	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs367335	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs373912	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs375246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs376638	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs377046	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs381103	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs382065	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383723	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs384029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs384046	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs384089	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs384686	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs386673	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs386790	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs387848	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs388962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs390442	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs390671	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs394556	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs395867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs399030	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs399431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs401444	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs403035	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs403872	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs403995	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404231	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404615	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs407355	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs407905	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs408174	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs409276	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs413303	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs414963	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs416197	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs416444	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs417681	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs417710	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs418849	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs421431	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs421501	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs429375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431962	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs432067	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs435565	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs437262	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs440274	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs443456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs446931	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447108	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs447119	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs449955	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs450428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs452704	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs453442	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs454032	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs454824	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597249	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs607114	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs643587	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs827480	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891049	chr8:78325885-78565529	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv891050	chr8:78351635-78532763	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831363	chr8:78367997-78522574	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv891051	chr8:78376314-78477561	Enhancers ZNF genes & repeats Weak transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1033669	chr8:78414508-78704839	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1016506	chr8:78414508-78750343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv539650	chr8:78414508-78750343	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1027588	chr8:78429707-78512574	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv891052	chr8:78445427-78498790	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv465720	chr8:78452222-78551702	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv611568	chr8:78452222-78551702	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78463600-78466000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:78464800-78465200	ZNF genes & repeats	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links