Variant report

Variant	rs3810574
Chromosome Location	chr20:23345589-23345590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:23341279-23355011	HepG2	liver:	n/a	n/a
2	POLR2A	chr20:23341069-23355530	K562	blood:	n/a	n/a
3	POLR2A	chr20:23340935-23347328	IMR90	lung:	n/a	n/a
4	POLR2A	chr20:23345454-23347365	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23344681..23346860-chr20:23360081..23363046,2	MCF-7	breast:

Variant related genes	Relation type
GZF1	TF binding region
ENSG00000201728	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16985225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17173282	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1891687	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2277766	1.00[EUR][1000 genomes]
rs6048732	0.87[ASN][1000 genomes]
rs6048733	0.91[ASN][1000 genomes]
rs6048734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73303402	1.00[EUR][1000 genomes]
rs73904259	0.91[ASN][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23342400-23352600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr20:23344000-23346000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:23344000-23347600	Enhancers	Primary T cells fromperipheralblood	blood
4	chr20:23344000-23392600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr20:23344200-23345800	Weak transcription	Ovary	ovary
6	chr20:23344200-23346000	Weak transcription	Fetal Brain Male	brain
7	chr20:23344200-23346600	Genic enhancers	Spleen	Spleen
8	chr20:23344400-23345800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr20:23344400-23346200	Weak transcription	Small Intestine	intestine
10	chr20:23344400-23346400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr20:23344400-23346400	Weak transcription	Primary B cells from cord blood	blood
12	chr20:23344400-23346400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr20:23344400-23346400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr20:23344400-23346400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr20:23344400-23346400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr20:23344400-23346600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr20:23344400-23346600	Strong transcription	Brain Angular Gyrus	brain
18	chr20:23344400-23346600	Weak transcription	Psoas Muscle	Psoas
19	chr20:23344400-23346600	Weak transcription	Hela-S3	cervix
20	chr20:23344400-23347200	Genic enhancers	Dnd41	blood
21	chr20:23344400-23347800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr20:23344400-23349200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr20:23344400-23350200	Weak transcription	Fetal Kidney	kidney
24	chr20:23344600-23345800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr20:23344600-23345800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr20:23344600-23346000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr20:23344600-23346000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr20:23344600-23346000	Weak transcription	Brain Anterior Caudate	brain
29	chr20:23344600-23346400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr20:23344600-23346800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr20:23344600-23347000	Enhancers	Fetal Heart	heart
32	chr20:23344600-23354200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr20:23344800-23345600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr20:23344800-23346600	Weak transcription	Stomach Mucosa	stomach
35	chr20:23344800-23346600	Strong transcription	NHEK	skin
36	chr20:23344800-23347800	Genic enhancers	Brain Inferior Temporal Lobe	brain
37	chr20:23344800-23347800	Strong transcription	A549	lung
38	chr20:23344800-23348800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
39	chr20:23344800-23362400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr20:23345000-23345600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr20:23345000-23345800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr20:23345000-23346000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr20:23345000-23346000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr20:23345000-23346000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr20:23345000-23346000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr20:23345000-23346000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr20:23345000-23346000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr20:23345000-23346000	Strong transcription	Gastric	stomach
49	chr20:23345000-23346000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr20:23345000-23346200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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