Variant report

Variant	rs6048733
Chromosome Location	chr20:23317403-23317404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16985225	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17173282	0.96[ASN][1000 genomes]
rs1891687	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3810574	0.91[ASN][1000 genomes]
rs6048732	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048734	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048735	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs73901804	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73904259	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23315600-23321000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr20:23316200-23317600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:23316400-23320600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:23316600-23317600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr20:23317000-23317800	Flanking Active TSS	HepG2	liver
7	chr20:23317200-23317800	Enhancers	Fetal Intestine Small	intestine
8	chr20:23317200-23318200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr20:23317200-23321600	Weak transcription	GM12878-XiMat	blood
10	chr20:23317400-23317800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr20:23317400-23318000	Flanking Active TSS	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links