Variant report

Variant	rs73904259
Chromosome Location	chr20:23313366-23313367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16985225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17173282	0.96[ASN][1000 genomes]
rs1891686	0.83[AMR][1000 genomes]
rs1891687	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3810574	0.91[ASN][1000 genomes]
rs6036385	0.83[AMR][1000 genomes]
rs6048732	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6048733	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048734	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6048735	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs73901804	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23307800-23314800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr20:23311800-23315000	Enhancers	K562	blood
3	chr20:23312400-23313400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:23312400-23313400	Enhancers	GM12878-XiMat	blood
5	chr20:23312400-23317600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:23312600-23313400	Enhancers	Primary B cells from peripheral blood	blood
7	chr20:23312600-23316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr20:23313000-23313400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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